International Journal of Evolutionary Biology

Research Article

Distribution of Genes Encoding Nucleoid-Associated Protein Homologs in Plasmids

Table 7

MOB_H-family plasmids of Gram-negative origin^a.


Plasmid name	Accession no.	Source organism	Length (nt)	G+C content (%)^b	NAP gene homolog	Identity (%)^c	Query coverage (%)	Subject start	Subject end

1	NC_007949	Polaromonas sp. JS666	360405	57	HU	52	99	61052	60786
1	NC_008573	Shewanella sp. ANA-3	278942	46
2	NC_007950	Polaromonas sp. JS666	338007	60
ICEhin1056	NC_011409	Haemophilus influenzae	59393	39
pAM04528	NC_012693	Salmonella enterica	158213	52	HU	57	99	14067	14333
pAPEC-O1-R	NC_009838	Escherichia coli APEC O1	241387	46
pAR060302	NC_012692	Escherichia coli	166530	53	HU	57	99	15755	16021
pAsa4	NC_009349	Aeromonas salmonicida subsp. salmonicida A449	166749	53	HU	60	99	26844	26578
pCAR1	NC_004444	Pseudomonas resinovorans	199035	56	MvaT	61	98	77640	77993
					NdpA	36	98	95390	94395
					HU	42	99	97809	98075
pEC-IMP	NC_012555	Enterobacter cloacae	318782	48	H-NS	64	99	109370	108969
pEC-IMPQ	NC_012556	Enterobacter cloacae	324503	48	H-NS	64	99	109370	108969
peH4H	NC_012690	Escherichia coli	148105	53	HU	57	99	14067	14333
pHCM1	NC_003384	Salmonella enterica subsp. enterica serovar Typhi str. CT18	218160	48	H-NS	61	99	131861	131460
pIP1202	NC_009141	Yersinia pestis bv. Orientalis str. IP275	182913	53	HU	57	99	14067	14333
pK29	NC_010870	Klebsiella pneumoniae	269674	46
plasmid1	NC_007901	Rhodoferax ferrireducens T118	257447	54
pMAK1	NC_009981	Salmonella enterica subsp. enterica serovar Choleraesuis	208409	47	H-NS	61	99	60046	59645
pMAQU02	NC_008739	Marinobacter aquaeolei VT8	213290	53
pO111_1	NC_013365	Escherichia coli O111:H- str. 11128	204604	47	H-NS	61	99	80175	79774
pP91278	NC_008613	Photobacterium damselae subsp. Piscicida	131520	52	HU	57	99	125918	126184
pP99-018	NC_008612	Photobacterium damselae subsp. piscicida	150157	51	HU	57	99	133314	133580
pRA1	NC_012885	Aeromonas hydrophila	143963	51	HU	58	99	15573	15839
pRp12D01	NC_012855	Ralstonia pickettii 12D	389779	58	HU	37	99	321346	321080
pSN254	NC_009140	Salmonella enterica subsp. enterica serovar Newport str. SL254	176473	53	HU	57	99	14067	14333
pTK9001	NC_013930	Thioalkalivibrio sp. K90mix	240256	62
pYR1	NC_009139	Yersinia ruckeri	158038	51	HU	57	99	15070	15336
R27	NC_002305	Salmonella enterica subsp. enterica serovar Typhi	180461	46	H-NS	61	99	148225	148626
R478	NC_005211	Serratia marcescens	274762	46	H-NS	64	99	111747	111346
Rts1	NC_003905	Proteus vulgaris	217182	46

^aThis list is the result of a TBLASTN analysis using the 300 N-terminal amino acid sequence of protein TraI_R27 as a query under strict conditions (i.e., thresholds of 30% identity and 70% query coverage).
^bAverage G+C content of the plasmid.
^cReported TBLASTN identity to each NAP.