Review Article
Comparative Pathogenomics of Bacteria Causing Infectious Diseases in Fish
Table 1
Currently sequenced genomes of bacterial pathogens of fish.
| | Organisms | Size (Mb) | CDS** | Unknown/ Hypothetical genes (%) | Pseudogenes prophages, ISE/GEI | % GC | Chromosomes | Plasmids |
| | Vibrio anguillarum 775 serotype O1 | 4.117 | 3880 | 26 | 92 | 44.3 | 2 | 1 | | Vibrio anguillarum 96F serotype O1 | 4.065 | 3766 | 26 | 38 | 42 | 2 | 0 | | Vibrio anguillarum RV22 serotype O2β | 4.022 | 3949 | 26 | 68 | 43.1 | 2 | 0 | | Vibrio ordalii ATCC 33509 | 3.415 | 3281 | — | 31 | 43.3 | 2 | 0 | | Vibrio harveyi ATCC BAA-1116* | 6.054 | — | — | — | 45.4 | 2 | 1 | | Vibrio vulnificus YJ016 biotype 1 | 5.26 | 5028 | 34 | — | 46.1 | 2 | 1 | | Vibrio splendidus strain LGP32 | 4.974 | 4498 | 24.8 | — | 43.8 | 2 | 0 | | Aliivibrio salmonicida strain LFI1238 | 4.655 | 4286 | — | 1179 | 38.3 | 2 | 4 | | Flavobacterium psychrophilum JIP02/86 | 2.862 | 2432 | 45.3 | 94 | 32.5 | 1 | 1 | | Flavobacterium branchiophilum FL-15 | 3.56 | 2867 | — | 54 | 32.9 | 1 | — | | Flavobacterium columnare ATCC 49512* | 3.2 | 2896 | — | — | 32.0 | 1 | — | | Edwardsiella tarda EIB202 | 3.76 | 3486 | 28 | 97 | 59.7 | 1 | 1 | | Edwardsiella ictaluri 93–146* | 3.812 | 3783 | — | 100 | 57.4 | 1 | — | | Aeromonas hydrophila ATCC 7966 | 4.744 | 5195 | 27.7 | 7 | 61.5 | 1 | 0 | | Aeromonas salmonicida A449 | 4.702 | 4437 | — | 258 | 58.5 | 1 | 5 | | Aeromonas veronii Strain B565 | 4.551 | 4057 | — | — | 58.7 | 1 | — | | A. caviae Ae398 | 4.43 | — | — | 6 | 61.4 | 1 | 1 | | Renibacterium salmoninarum ATCC 33209 | 3.155 | 3507 | 25.3 | 151 | 56.3 | 1 | 0 | | Streptococcus parauberis | 2.143 | 2641 | 21.3 | — | 35.6 | 1 | 0 | | Lactococcus garvieae UNIUD074 | 2.172 | 2101 | 21.8 | 224 | 38.7 | 1 | 0 | | Mycobacterium marinum M | 6.636 | 5424 | 26 | 65 | 62.5 | 1 | 1 |
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* Unpublished.
** Coding sequences.
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