Investigating the Relationship between Topology and Evolution in a Dynamic Nematode Odor Genetic Network
Table 1
Orthology support for each node within the odor-signaling network.
C. elegans gene
P. pacificus ortholog
Evidence of orthology
goa-1
PPA23648/Ppa-goa-1
WormBase-Compara
odr-3
PPA14189/Ppa-odr-3
InParanoid; OMA; WormBase-Compara
egl-30
PPA31690/Ppa-egl-30
WormBase-Compara
gpa-3
PPA09867/Ppa-gpa-3
InParanoid; OMA; WormBase-Compara
gpa-5
PPA10789
OMA; WormBase-Compara
gpa-13
PPA31402/Ppa-gpa-13
WormBase-Compara
eat-4
PPA15025/Ppa-eat-4
InParanoid; WormBase-Compara
dgk-1
PPA00312/Ppa-dgk-1
InParanoid; OMA; WormBase-Compara
odr-1
PPA17708
InParanoid; OMA
daf-11
PPA14907/Ppa-daf-11
WormBase-Compara
tax-6
PPA09320/Ppa-tax-6
WormBase-Compara
pkg-1
PPA27475/Ppa-pkg-1
InParanoid; OMA; WormBase-Compara
tax-2
PPA07436/Ppa-tax-2
InParanoid; OMA; WormBase-Compara
tax-4
PPA02388/Ppa-tax-4
InParanoid; OMA; WormBase-Compara
rgs-3
PPA01970/Ppa-rgs-3
InParanoid; OMA; WormBase-Compara
arr-1
PPA21763/Ppa-arr-1
WormBase-Compara
Relationship support was confirmed by reconstructing phylogenetic trees for each gene except rgs-3 and arr-1 as they represent single-gene families, and therefore not possible to reconstruct phylogeny (see Figures S1–S7).