Research Article

Comparison of Whole Genome Amplification Methods for Analysis of DNA Extracted from Microdissected Early Breast Lesions in Formalin-Fixed Paraffin-Embedded Tissue

Figure 1

Pseudocolor representation of a correlation matrix, showing a relationship between nonamplified DNA ( 𝑛 = 8 ), SCOMP (SCOMP amplified, 𝑛 = 8 ), placenta (self-hybridizations of normal genomic DNA, 𝑛 = 8 ), and DOP (DOP-PCR amplified, 𝑛 = 3 ) array experiments. The color map corresponds to the scale of correlation coefficients; positive correlated data range in color from light blue to dark red, negatively correlated data range from light blue to dark blue. The diagonal of the symmetric correlation matrix represents self-correlation and thus is equal to one (dark red).
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