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Soft computing technique used | Organism (datasets used) | Program (URLs wherever available) | Prediction type |
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Back-propagation NN1 | Human, mouse, arabidopsis, drosophila, rice (GenBank [52]) | GRAIL-I [21] http://compbio.ornl.gov/grailexp | Exons |
Back-propagation NN | Human, vertebrates (GenBank) | GeneParser [24] http://beagle.colorado.edu/~eesnyder/GeneParser.html | Exons, introns |
Back-propagation NN | Human, mouse (GenBank) | GRAIL-II [22] | Exons |
Back-propagation NN | Human, mouse, plant (GenBank) | CODEX [26] | Exons |
Back-propagation NN | Vertebrates (GenBank) | GIN [29] http://www.bork.emblheidelberg.de/fmilpetz/GIN/ | Exons |
Back-propagation NN | S. cerevisiae genome (MIPS [53]) | MLFANN (yeast genome) [32] | Open reading frames |
Back-propagation ANN | Streptococcus pyogenes M group A Streptococcus strains (GenBank) | SpyMGASLacGenePred [35] | Open reading frames |
Self-organizing map NN | E. coli, B. subtilis, H. influenza, Buchnera, B. burgdorferi, M. jannaschii, M. genitalium, H. pylori, A. aeolicus, Synechocystis, Y. pestis, D. radiodurans, R. solanacearum, S. coelicolor, C. jejuni (GenBank) | RescueNet [34] http://bioinf.nuigalway.ie/RescueNet/ | Gene-coding region (prokaryotes) |
Multilayer perceptron NN | Microbial Genome (DEG [54] NCBI [55]) | EG-MLP (microbial genome) [37] | Genes |
GA2 | Human genome (GenBank) | Evolutionary algorithm [46] | Exons, introns |
NN + GA | E. coli (PromEC [56], Wisconsin-Madison [57]) | MultiNNProm [48] | Promoters |
NN + GA | Arabidopsis, E. coli, human, mouse, rat (GenBank and HMR195 [58]) | RBFN-combining [49] | Exons |
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