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Computational Biology Journal
Table of Contents
Computational Biology Journal
/
2014
/
Article
/
Tab 1
/
Research Article
A Transcriptome Post-Scaffolding Method for Assembling High Quality Contigs
Table 1
Data sets description.
Organism
Original number of contigs
Preassembled methods
Reference
Source
D. frontalis
[
9
]
20,966
Newbler 2.5
Tribolium castaneum
GAFI01
(
http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=GAFI01
)
D. ponderosae
[
10
]
20,540
Newbler 2.5
Tribolium castaneum
GAFX01
(
http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=GAFX01
)
D. citri
[
11
]
27,821
Velvet v.1.0.19,
Oases v.0.1.19
Acyrthosiphon pisum
GACJ01
(
http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=GACJ01
)
I. ricinus
[
12
]
8,685
Abyss v.1.3.4,
Trinity v.2012-06
Cap3 v.1999
Ixodes scapularis
GADI01
(
http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=GADI01
)