Research Article
In Silico Characterization and Structural Modeling of Dermacentor andersoni p36 Immunosuppressive Protein
Table 3
Validation of 3D structures for models 2 and 9 of D. andersoni p36 protein.
| | Number | Validation tool | Parameter monitored | Limit | Results | | Model 2 | Model 9 |
| | (1) | ProQPsiPred | LGscore | LG score > 1.5 fairly good model
LG score > 2.5 very good model
LG score > 4 extremely good model | LGscore 2.797 | LGscore 2.366 | | MaxSub | MaxSub > 0.1 fairly good model
MaxSub > 0.5 very good model
MaxSub > 0.8 extremely good model | MaxSub 0.208 | MaxSub 0.055 |
| | (2) | ProQJPred | LGscore | LG score > 1.5 fairly good model
LG score > 2.5 very good model
LG score > 4 extremely good model | LGscore 2.914 | LGscore 2.231 | | MaxSub | MaxSub > 0.1 fairly good model
MaxSub > 0.5 very good model
MaxSub > 0.8 extremely good model | MaxSub 0.219 | MaxSub 0.046 |
| | (3) | Rampage tool | Favoured region residues
Allowed region residues
Outlier region residues | | 156 (79.2%)
26 (13.2%)
15 (7.6%) | 152 (77.2%)
24 (12.2%)
21 (10.7%) |
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