Research Article
In Silico Characterization and Structural Modeling of Dermacentor andersoni p36 Immunosuppressive Protein
Table 3
Validation of 3D structures for models 2 and 9 of D. andersoni p36 protein.
| Number | Validation tool | Parameter monitored | Limit | Results | Model 2 | Model 9 |
| (1) | ProQPsiPred | LGscore | LG score > 1.5 fairly good model LG score > 2.5 very good model LG score > 4 extremely good model | LGscore 2.797 | LGscore 2.366 | MaxSub | MaxSub > 0.1 fairly good model MaxSub > 0.5 very good model MaxSub > 0.8 extremely good model | MaxSub 0.208 | MaxSub 0.055 |
| (2) | ProQJPred | LGscore | LG score > 1.5 fairly good model LG score > 2.5 very good model LG score > 4 extremely good model | LGscore 2.914 | LGscore 2.231 | MaxSub | MaxSub > 0.1 fairly good model MaxSub > 0.5 very good model MaxSub > 0.8 extremely good model | MaxSub 0.219 | MaxSub 0.046 |
| (3) | Rampage tool | Favoured region residues Allowed region residues Outlier region residues | ā | 156 (79.2%) 26 (13.2%) 15 (7.6%) | 152 (77.2%) 24 (12.2%) 21 (10.7%) |
|
|