Research Article
Systemic Identification of Hevea brasiliensis EST-SSR Markers and Primer Screening
Table 3
Frequency of classified repeat types (considering sequence complementary) in the analysed 840 splicing sequences.
| | Repeats motif | Number of repeat units | Total repeats | Frequency of repeats | | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | >15 |
| | A/T | — | — | — | — | — | — | 119 | 66 | 45 | 28 | 23 | 18 | 137 | 436 | 38.45 | | C/G | — | — | — | — | — | — | 4 | — | — | — | — | — | 1 | 5 | 0.44 | | AC/GT | — | — | 3 | 2 | 2 | — | — | — | 1 | — | — | — | 1 | 9 | 0.79 | | AG/CT | — | — | 52 | 22 | 25 | 23 | 20 | 16 | 15 | 9 | 13 | 13 | 141 | 349 | 30.78 | | AT/AT | — | — | 15 | 6 | 5 | 4 | 2 | 3 | 1 | 4 | 4 | — | 17 | 61 | 5.38 | | AAC/GTT | — | 2 | 1 | — | — | — | — | 1 | — | — | — | — | — | 4 | 0.35 | | AAG/CTT | — | 28 | 15 | 6 | 9 | 11 | 4 | 3 | — | 1 | — | — | 1 | 78 | 6.88 | | AAT/ATT | — | 15 | 5 | 1 | 2 | — | — | 2 | | 1 | — | — | 2 | 28 | 2.47 | | ACC/GGT | — | 9 | 2 | 2 | 1 | — | 2 | — | — | — | — | — | — | 16 | 1.41 | | ACG/CGT | — | 3 | — | — | — | — | 1 | 1 | — | — | — | — | — | 5 | 0.44 | | ACT/AGT | — | — | 1 | — | — | — | — | — | — | — | — | — | — | 1 | 0.09 | | AGC/CTG | — | 14 | 6 | 2 | 2 | — | — | — | — | — | — | — | — | 24 | 2.12 | | AGG/CCT | — | 16 | 4 | 6 | — | 1 | — | — | — | — | — | — | — | 27 | 2.38 | | ATC/ATG | — | 10 | 4 | 3 | 3 | — | 1 | — | 1 | — | — | — | — | 22 | 1.94 | | CCG/CGG | — | 1 | — | — | — | — | — | — | — | — | — | — | — | 1 | 0.09 | | AAAC/GTTT | | 1 | — | — | — | — | — | — | — | — | — | — | — | 1 | 0.09 | | AAAG/CTTT | 7 | 1 | 1 | — | — | — | — | — | — | — | — | — | — | 9 | 0.79 | | AAAT/ATTT | 6 | 1 | 2 | — | — | — | — | — | — | — | — | — | — | 9 | 0.79 | | AACC/GGTT | 1 | — | — | — | — | — | — | — | — | — | — | — | — | 1 | 0.09 | | AATG/ATTC | 2 | — | — | — | — | — | — | — | — | — | — | — | — | 2 | 0.18 | | AATT/AATT | 4 | — | — | — | — | — | — | — | — | — | — | — | — | 4 | 0.35 | | ACAG/CTGT | 1 | — | — | — | — | — | — | — | — | — | — | — | — | 1 | 0.09 | | AGAT/ATCT | 1 | 1 | — | — | — | — | — | — | — | — | — | — | — | 2 | 0.18 | | AGCG/CGCT | 1 | — | — | — | — | — | — | — | — | — | — | — | — | 1 | 0.09 | | AGCT/AGCT | 1 | — | — | — | — | — | — | — | — | — | — | — | — | 1 | 0.09 | | AGGC/CCTG | 1 | — | — | — | — | — | — | — | — | — | — | — | — | 1 | 0.09 | | ATGC/ATGC | 1 | — | — | — | — | — | — | — | — | — | — | — | — | 1 | 0.09 | | AAAAC/GTTTT | 2 | — | — | — | — | — | — | — | — | — | — | — | — | 2 | 0.18 | | AAAAG/CTTTT | 1 | — | — | — | — | — | — | — | — | — | — | — | — | 1 | 0.09 | | AAAAT/ATTTT | 1 | 2 | — | — | — | — | — | — | — | — | — | — | — | 3 | 0.26 | | AACAG/CTGTT | 2 | — | — | — | — | — | — | — | — | — | — | — | — | 2 | 0.18 | | AAGAG/CTCTT | 1 | — | — | — | — | — | — | — | — | — | — | — | — | 1 | 0.09 | | AAAAAG/CTTTTT | 3 | — | — | — | — | — | — | — | — | — | — | — | — | 3 | 0.26 | | AAAACG/CGTTTT | 1 | — | — | — | — | — | — | — | — | — | — | — | — | 1 | 0.09 | | AACAGC/CTGTTG | — | 1 | — | — | — | — | — | — | — | — | — | — | — | 1 | 0.09 | | AACCCT/AGGGTT | 1 | — | — | — | — | — | — | — | — | — | — | — | — | 1 | 0.09 | | AACCGC/CGGTTG | — | 1 | — | — | — | — | — | — | — | — | — | — | — | 1 | 0.09 | | AACCTG/AGGTTC | — | 1 | — | — | — | — | — | — | — | — | — | — | — | 1 | 0.09 | | AACGAG/CGTTCT | — | 1 | — | — | — | — | — | — | — | — | — | — | — | 1 | 0.09 | | AACGGG/CCCGTT | — | 1 | — | — | — | — | — | — | — | — | — | — | — | 1 | 0.09 | | AAGACG/CGTCTT | — | 1 | — | — | — | — | — | — | — | — | — | — | — | 1 | 0.09 | | AAGCCT/AGGCTT | 1 | — | — | — | — | — | — | — | — | — | — | — | — | 1 | 0.09 | | AAGCTG/AGCTTC | 1 | — | — | — | — | — | — | — | — | — | — | — | — | 1 | 0.09 | | AAGGCC/CCTTGG | 1 | — | — | — | — | — | — | — | — | — | — | — | — | 1 | 0.09 | | ACCAGC/CTGGTG | — | — | — | — | — | — | 1 | — | — | — | — | — | — | 1 | 0.09 | | ACCATC/ATGGTG | — | — | 1 | — | — | — | — | — | — | — | — | — | — | 1 | 0.09 | | ACCGCC/CGGTGG | 2 | — | — | — | — | — | — | — | — | — | — | — | — | 2 | 0.18 | | ACCGGC/CCGGTG | — | 1 | — | — | — | — | — | — | — | — | — | — | — | 1 | 0.09 | | ACCTCC/AGGTGG | 1 | — | — | — | — | — | — | — | — | — | — | — | — | 1 | 0.09 | | ACCTGC/AGGTGC | — | — | — | — | — | 1 | — | — | — | — | — | — | — | 1 | 0.09 | | ACTGAG/AGTCTC | — | 1 | — | — | — | — | — | — | — | — | — | — | — | 1 | 0.09 | | ACTGCC/AGTGGC | — | 1 | — | — | — | — | — | — | — | — | — | — | — | 1 | 0.09 | | AGCAGG/CCTGCT | — | — | — | — | 1 | — | — | — | — | — | — | — | — | 1 | 0.09 | | AGCGGC/CCGCTG | — | 1 | — | — | — | — | — | — | — | — | — | — | — | 1 | 0.09 | | AGGGGC/CCCCTG | 1 | — | — | — | — | — | — | — | — | — | — | — | — | 1 | 0.09 | | Total | 45 | 114 | 112 | 50 | 50 | 40 | 154 | 92 | 63 | 43 | 40 | 31 | 300 | 1134 | 100 | | Account for (100%) | 3.97 | 10.05 | 9.88 | 4.41 | 4.41 | 3.53 | 13.58 | 8.11 | 5.56 | 3.79 | 3.53 | 2.73 | 26.46 | | |
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