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Advances in Bioinformatics
Volume 2009, Article ID 193947, 11 pages
http://dx.doi.org/10.1155/2009/193947
Research Article

FlowFP: A Bioconductor Package for Fingerprinting Flow Cytometric Data

Department of Pathology and Laboratory Medicine, School of Medicine, University of Pennsylvania, 207 John Morgan Bldg., Philadelphia, PA 19104-6082, USA

Received 1 April 2009; Accepted 18 June 2009

Academic Editor: Raphael Gottardo

Copyright © 2009 Wade T. Rogers and Herbert A. Holyst. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Supplementary Material

These supplementary figures illustrate some of the additional visualization capabilities of flowFP. Figure S1 shows the visualization of a flowFPModel. Figure S1(B) shows the bins of a 2-dimensional model. Figures S1(C-F) show the use of transparency in the display of bins to reveal the underlying distribution depicted in dot-plot form. Figure S2 shows several methods of illustrating fingperprints in order to facilitate comparisons across instances. Figure S3 links fingerprint index with the spatial location of events in specific fingerprint bins by way of color. Finally, Figure S4 shows the visualization of informative features derived from Tube 4, as described in Section 3.2 of the text.

  1. Supplementary Material