NovelSNPer: A Fast Tool for the Identification and Characterization of Novel SNPs and InDels
Table 6
(a) Ambiguous long indels. Multiple deletion notation on human chromosome 14. The nucleotides of the deletion are underlined in the reference sequence. In the new sequence a gap at the position of the deletion is shown.
Name
Start
End
Alleles
Reference sequence
Alternative sequence
rs3841049
21560753
21560758
GAGGCT/-
GTGGAGGCTGAGGCTGAGGCTGAGGCGG
GTG GAGGCTGAGGCTGAGGCGG
rs71814523
21560759
21560764
GAGGCT/-
GTGGAGGCTGAGGCTGAGGCTGAGGCGG
GTGGAGGCT GAGGCTGAGGCGG
rs72383174
21560762
21560767
GCTGAG/-
GTGGAGGCTGAGGCTGAGGCTGAGGCGG
GTGGAGGCTGAG GCTGAGGCGG
rs7179484
21560764
21560759
GAGGCT/-
GTGGAGGCTGAGGCTGAGGCTGAGGCGG
GTGGAGGCTGAGGC TGAGGCGG
(b) Ambiguous long indels. Multiple deletion notation on human chromosome 19. The nucleotides of the deletion are underlined in the reference sequence. In the new sequence a gap at the position of the deletion is shown.