PhosphoHunter: An Efficient Software Tool for Phosphopeptide Identification

Table 4

Performance of PhosphoHunter in terms of sequence detection and phosphorylation sites localization.

Intensity threshold	Sequences identified		Sequences identified
	(all the hits)		(hits with -value ≤  )
	Correct sequences	Correct sites	Correct sequences	Correct sites

The 750 MS/MS spectra of phosphorylated peptides were considered and the intensity threshold was tuned from 0 to 100.