Resource Review
HBS-Tools for Hairpin Bisulfite Sequencing Data Processing and Analysis
Table 1
Summary of the programs included in HBS-tools.
| Module name | Function |
| hbs_process | Preprocessing of raw reads, including bad quality bases trimming, sequencing adaptor, and hairpin adaptor removal | hbs_mapper | Original sequence recovery, mapping, and SAM file output | hbs_methylation_extractor | Extract and output methylation pattern from the SAM file | hbs_cg_mlmf | Summarize the methylation level and fidelity for covered CpG sites | hbs_ch_ml | Summarize the methylation level for covered non_CpG sites |
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