Research Article
Expressing Redundancy among Linear-Epitope Sequence Data Based on Residue-Level Physicochemical Similarity in the Context of Antigenic Cross-Reaction
Table 1
Numbers of unsatisfied hydrogen bonds for amino-acid residue substitutions of Figure
2, calculated according to (
9).
| | | G | A | S | C | D | T | P | N | V | E | Q | H | L | I | M | K | R | F | Y | W |
| | G | 0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | | A | 0 | 0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | | S | 1 | 1 | 0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | | C | 0 | 0 | 1 | 0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | | D | 2 | 2 | — | — | 0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | | T | 1 | 1 | 0 | 1 | — | 0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | | P | 1 | 1 | — | — | — | — | 0 | — | — | — | — | — | — | — | — | — | — | — | — | — | | N | 2 | 2 | — | — | 2 | — | — | 0 | — | — | — | — | — | — | — | — | — | — | — | — | | V | 0 | 0 | 1 | 0 | — | 1 | — | — | 0 | — | — | — | — | — | — | — | — | — | — | — | | E | 2 | 2 | 3 | 2 | — | — | — | — | — | 0 | — | — | — | — | — | — | — | — | — | — | | Q | 2 | 2 | 3 | 2 | — | — | — | — | — | 2 | 0 | — | — | — | — | — | — | — | — | — | | H | 2 | 2 | — | — | — | — | — | — | — | — | — | 0 | — | — | — | — | — | — | — | — | | L | 0 | 0 | 1 | 0 | — | — | — | — | — | — | — | — | 0 | — | — | — | — | — | — | — | | I | 0 | 0 | 1 | 0 | — | 1 | — | — | 0 | — | — | — | — | 0 | — | — | — | — | — | — | | M | 0 | 0 | 1 | 0 | — | — | — | — | — | — | — | — | — | — | 0 | — | — | — | — | — | | K | 1 | 1 | 2 | 1 | — | — | — | — | — | — | — | — | — | — | 1 | 0 | — | — | — | — | | R | 3 | 3 | 4 | 3 | — | — | — | — | — | — | — | — | — | — | 3 | 4 | 0 | — | — | — | | F | 0 | 0 | — | — | 2 | — | — | 2 | — | — | — | — | — | — | — | — | — | 0 | — | — | | Y | 1 | 1 | — | — | 3 | — | — | 3 | — | — | — | — | — | — | — | — | — | 1 | 0 | — | | W | 1 | 1 | — | — | — | — | — | — | — | — | — | 1 | — | — | — | — | — | — | — | 0 |
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