Research Article

Efficacy and Toxicity Assessment of Different Antibody Based Antiangiogenic Drugs by Computational Docking Method

Table 2

Sources of PDB files used in the study.

Receptor/drug Code/accession numberWebsite reference

Androgen receptorPDB ID 2YHD (edited)http://www.rcsb.org/pdb/home/
Beta-1 receptorPDB ID 2VT4 (edited)
Beta-2 receptorPDB ID 2R4R (edited)
Dopamine-2
(D2) receptor
PDB ID 2YOU (edited)
Estrogen- (ER-) receptorPDB ID 1X7E (edited)
GABA-A receptorPDB ID 3D32 (edited)
GABA-B receptorPDB ID 1SRZ (edited)
Histamine (H2) receptorUniv. of Michiganhttp://www.personal.umich.edu/~him/H2A.htm
Angiotensin II
type 1 (AT 1) receptor
PDB ID 3D0G (edited)http://www.rcsb.org/pdb/home/
Nitric oxide synthase (NOS)PDB ID 1ED5 (edited)
Tyrosine kinase (TK)PDB ID 1M17 (edited TK domain of EGF)http://www.rcsb.org/pdb/home/
Adrenoceptor alpha 2a (ADRA2A)PDB ID 1HLL
Angiotensin converting enzyme (ACE)PDB ID 4UFA
Ca-channelPDB ID 1T3L
Her-2/NeuPDB ID 1S78 (edited)http://www.rcsb.org/pdb/home/
VEGF
(vascular endothelial growth factor)-C
PDB ID 2XIX (edited)
Angiotensin IIPDB ID 1ZV0 (edited)
NNA
(N-nitro-L-arginine)
PDB ID 8NSE
ImatinibPrimary Acc. number DB00619http://www.drugbank.ca
CyproteronePrimary Acc. number DB04839
NandrolonePrimary Acc. number DB00984
PropranololPrimary Acc. number DB00571
EpinephrinePrimary Acc. number DB00668
RisperidonePrimary Acc. number DB00734
CabergolinePrimary Acc. number DB00248
FlumazenilPrimary Acc. number DB01205
DiazepamPrimary Acc. number DB00829
TamoxifenPrimary Acc. number DB00675 http://www.drugbank.ca
Ethinyl estradiolPrimary Acc. number DB00977
SaclofenMarvin sketched at http://www.chemaxon.com and saved as pdbhttp://www.chemaxon.com
BaclofenPrimary Acc. number DB00181http://www.drugbank.ca
RanitidinePrimary Acc. number DB00863
BetazolePrimary Acc. number DB00272
Losartan Primary Acc. number DB00678
YohimbinePrimary Acc. number DB01392
ClonidinePrimary Acc. number DB00575
Lisinopril Primary Acc. number DB00722
NifedipinePrimary Acc. number DB01115
Bevacizumab/AvastinPrimary Acc. number DB00112
Trastuzumab/HerceptinPrimary Acc. number DB00072
Substance PPrimary Acc. number DB05875

accessed on 4-Dec-2011.