Advances in Bioinformatics / 2016 / Article / Alg 3

Research Article

Multiphase Simulated Annealing Based on Boltzmann and Bose-Einstein Distribution Applied to Protein Folding Problem

Algorithm 3

MQP pseudocode of MPSABBE algorithm.
(1) MQP Procedure( )
(2) Begin
(3) //Setting section
(4)   = Initial Temperature calculated by analytical method
(5)   = Initial value,
(6)    = initial value, = Initial value
(7) //Creation of initial solution
(8)   = Create the initial solution,
(9)  ,
(10)   Repeat //External Cycle
(11)   Repeat //Internal Cycle (Metropolis Cycle)
(12)     = Perturbation () //Uniform perturbation
(13)    Difference =
(14)    If Difference ≤ 0 Then
(15)      
(16)       
(17)    elseif Then //Boltzmann Probability
(18)      
(19)      
(20)    end if
(21)    If then //save
(22)      
(23)      
(24)    end if
(25)   Until Metropolis Cycle is Finished
(26)    =
(27)   If very close to 0 Then
(28)     = initial value
(29)   end if
(30)   
(31)  Until > //External Cycle
(32) End procedure

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