Multiphase Simulated Annealing Based on Boltzmann and Bose-Einstein Distribution Applied to Protein Folding Problem

Algorithm 4

Pseudocode of BAP phase of MPSABBE.

(1) BAP Phase( )

(2)    Begin

(3)      (Final temperature of MQP Phase)

(4)      = Final Temperature of this phase

(5)      = initial value (very close to one)

(6)      = Value calculated by analytical method

(7)     CM = Initial value

(8)      While () do

(9)      

(10)      while () do

(11)       = perturbation system()

(12)      Difference =

(13)      If (Difference ≤ 0) then

(14)         

(15)         

(16)      ElseIf ( then

(17)         

(18)         

(19)      End if

(20)      If then //save

(21)            

(22)           

(23)      end if

(24)      

(25)     end while

(26)      or

(27)     

(28)     End while

(29) End