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Advances in Bioinformatics
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Advances in Bioinformatics
/
2016
/
Article
/
Tab 6
/
Research Article
Random versus Deterministic Descent in RNA Energy Landscape Analysis
Table 6
Run-time in minutes of
R
NAsubo
pt
,
Barriers
,
and modified
RNAlocmin
descent procedures for
conformations. Note: RNAlocmin energy evaluation using
energy_of_move()
.
Number
RNAsubopt
time
Barriers
time
Gradient time
Random time
First time
1
99
1.0
1.48
6.43
5.42
4.03
3.40
2
99
1.0
1.40
5.78
3.03
3.67
3.62
3
113
2.0
1.48
13.63
3.95
6.68
3.38
4
124
1.0
1.70
10.52
3.62
3.27
3.12
5
284
1.5
5.87
18.52
7.22
6.45
6.18
6
302
1.5
6.58
33.90
7.12
6.04
5.93
7
386
2.5
9.25
60.12
12.67
11.10
10.57
8
400
1.5
10.25
53.30
6.62
5.82
5.27
9
407
1.0
15.12
40.12
5.18
4.15
3.95
10
504
2.0
15.75
47.63
9.10
8.40
7.92
Total
68.88
289.84
63.94
59.61
53.34