Prediction of Ubiquitination Sites Using UbiNets

Table 3

Classifier performance on dataset 1.

Models	10-run average AUC	10-run average accuracy	10-run model averaging AUC score
ub_v1	0.68927	0.63013	0.69230
ub_deeper	0.68915	0.63255	0.69194
ub_deeper_x2	0.68981	0.63299	0.69200
Dense_residual_v2	0.69142	0.63717	0.69349
50x2_mlp_elu	0.68679	0.63607	0.68818
100x2_mlp_elu	0.68643	0.63226	0.68772
50x2_mlp_relu	0.68871	0.63072	0.69175
100x2_mlp_relu	0.68670	0.63065	0.69017
Random forest, 100 estimators	0.67386	0.62727	0.68425
Random forest, 200 estimators	0.68009	0.62918	0.68678
gbm, 100 estimators	0.68339	0.63233	0.69438