Prediction of Ubiquitination Sites Using UbiNets

Table 4

Classifier performance on dataset 2.

Models	10-run average AUC	10-run average accuracy	10-run model averaging AUC score
ub_v1	0.69030	0.64450	0.69130
ub_deeper	0.68940	0.64410	0.69030
ub_deeper_x2	0.68810	0.64150	0.68888
Dense_residual_v2	0.69230	0.64430	0.69340
50x2_mlp_elu	0.68660	0.63830	0.68700
100x2_mlp_elu	0.68640	0.63850	0.68700
50x2_mlp_relu	0.68960	0.64360	0.69070
100x2_mlp_relu	0.68940	0.64360	0.69070
Random forest, 100 estimators	0.67425	0.63075	0.68312
Random forest, 200 estimators	0.67773	0.63185	0.68336
gbm, 100 estimators	0.68818	0.63922	0.69269