Prediction of Ubiquitination Sites Using UbiNets

Table 5

Classifier performance on dataset 3.

Models	10-run average AUC	10-run average accuracy	10-run model averaging AUC score
ub_v1	0.68980	0.64370	0.69120
ub_deeper	0.68880	0.64320	0.68970
ub_deeper_x2	0.68820	0.64250	0.68910
Dense_residual_v2	0.69170	0.64480	0.69270
50x2_mlp_elu	0.68540	0.63970	0.68620
100x2_mlp_elu	0.68650	0.63940	0.68730
50x2_mlp_relu	0.68970	0.63410	0.69080
100x2_mlp_relu	0.69000	0.64480	0.69140
Random forest, 100 estimators	0.67498	0.63050	0.68415
Random forest, 200 estimators	0.67788	0.63362	0.68335
gbm, 100 estimators	0.68790	0.63978	0.69213