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ORFa | Positionb | Locus tag | Lengthc (aa) | pKi | Similarity/characteristics |
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1 | 441–605 | HhPH1_gp01 | 50 | 4.3 | 76% aa similarity to SH1 ORF2 (YP_271859) |
2 | 602–802 | HhPH1_gp02 | 66 | 10.9 | 80% aa similarity to SH1 ORF3 (YP_271860) |
3 | 802–1059 | HhPH1_gp03 | 85 | 3.9 | 85% aa similarity to SH1 ORF4 (YP_271861). 44% similarity to HHIV-2 protein 1 |
4 | 1056–1283 | HhPH1_gp04 | 75 | 3.9 | 85% aa identity to SH1 ORF5 (YP_271862). Predicted coiled-coil region. |
5 | 1276–1686 | HhPH1_gp05 | 136 | 4.9 | 80% aa similarity to SH1 ORF6 (YP_271863). Two transmembrane domains. Also related to HHIV-2 protein 2 (38%, AFD02283) and to Halobiforma lacisalsi ORF ZP_09950018 (35%) |
6 | 1683–1829 | HhPH1_gp06 | 48 | 6.1 | 81% aa similarity to SH1 ORF7 (YP_271864). Predicted signal sequence (SignalP). |
7 | 1822–2130 | HhPH1_gp07 | 102 | 5.8 | 91% aa similarity to SH1 ORF8 (YP_271865) and 86% to HHIV-2 putative protein 3 (AFD02284). Other homologs include Nocardia protein pnf2110 (YP_122060.1), Hrr. lacusprofundi Hlac_0751 (YP_002565421.1), ORFs in actinophage VWB (AAR29707), Frankia (EAN11657), and gp40 of Mycobacterium phage Dori (AER47690) |
8 | 2123–2383 | HhPH1_gp08 | 86 | 4.2 | 90% aa similarity to SH1 ORF9 (YP_271866) |
9 | 2380–2714 | HhPH1_gp09 | 111 | 5.2 | 88% aa similarity to SH1 ORF11 (YP_271868) and also similarity to putative protein 4 of HHIV-2 (AFD02285) HlacAJ_19877 of Hbf. lacisalsi AJ5 (ZP_09950016) |
10 | 2861–3004 | HhPH1_gp10 | 47 | 10.4 | Weak similarity to SH1 ORF12 (YP_271869) only over the N-terminal 18 residues |
11 | 3029–3100 | HhPH1_gp11 | 23 | 12.3 | Not present in SH1 or HHIV-2 |
12 | 3134–7453 | HhPH1_gp12 | 1439 | 4.2 | Capsid protein VP1. 72% similarity to SH1 VP1 (ORF 13, YP_271870); HHIV-2 VP1 (AFD02286); HlacAJ_19872 Hbf. lacisalsi AJ5. Predicted helix-turn-helix and RuvA-like domain (InterproScan) |
13 | 7505–8227 | HhPH1_gp13 | 240 | 5.4 | Predicted P-loop ATPase domain (COG0433). 92% aa similarity to SH1 ORF17 (YP_271874) and also similarity to putative ATPase of HHIV-2 (AFD02288); ATPase of Haladapatus paucihalophilus DX253 (ZP_08046180); HlacAJ_19867 of Hbf. lacisalsi (ZP_09950014) |
14 | 8419–8228c | HhPH1_gp14 | 63 | 5.1 | 43% aa similarity to SH1 ORF18 (YP_271875). Alanine-rich. Central transmembrane domain (Phobius) |
15 | 8856–8416c | HhPH1_gp15 | 146 | 4.1 | 92% aa similarity to SH1 ORF19 (YP_271876) and also to HHIV-2 putative protein 9 (AFD02290); HlacAJ_19857 of Hbf. lacisalsi AJ5; ZOD2009_19093 of Hap. paucihalophilus |
16 | 8853–9500c | HhPH1_gp16 | 215 | 3.9 | 65% aa similarity to SH1 ORF20 (YP_271877) and also to putative protein 11 of HHIV-2 (AFD02292); ZOD2009_19098 of Hap. paucihalophilus; HlacAJ_19852 Hbf. lacisalsi AJ5. C-terminal transmembrane domain (Phobius) |
17 | 9500–9919c | HhPH1_gp17 | 139 | 4.1 | 79% aa similarity to SH1 ORF21 (YP_271878) and also to putative protein 12 of HHIV-2 (AFD02293); hypothetical protein HlacAJ_19847 of Hbf. lacisalsi (ZP_09950010). Transmembrane domain (Phobius) |
18 | 9923–10594c | HhPH1_gp18 | 223 | 4.3 | 83% aa similarity to SH1 ORF22 (YP_271879) and also to putative protein 13 of HHIV-2 (AFD02294), ZOD2009_19108 of Hap. paucihalophilus; HlacAJ_19842 of Hbf. lacisalsi. Predicted signal sequence (signalP). Contains 4 CxxC motifs. |
19 | 10659–10943 | HhPH1_gp19 | 94 | 10.4 | Capsid protein VP12 (ORF19). 91% aa similarity to SH1 VP12 (ORF23, YP_271880) and also to VP12 of HHIV-2 (AFD02295) and HlacAJ_19837 of Hbf. lacisalsi; ZOD2009_19113 of Hap. paucihalophilus. Two transmembrane domains (Phobius) |
20 | 10960–11517 | HhPH1_gp20 | 185 | 4.4 | Capsid protein VP7 (ORF20). 98% aa similarity to SH1 VP7 (ORF24, YP_271881) and also to VP7 of HHIV-2 (AFD02296); ZOD2009_19118 of Hap. paucihalophilus; HlacAJ_19832 of Hbf. lacisalsi AJ5 |
21 | 11519–12217 | HhPH1_gp21 | 232 | 4.1 | Capsid protein VP4 (ORF21). 94% aa similarity to SH1 ORF25 (YP_271882) and also to VP4 of HHIV-2 (AFD02297); ZOD2009_19123 of Hap. paucihalophilus; HlacAJ_19827 of Hbf. lacisalsi AJ5 |
22 | 12233–12454 | HhPH1_gp22 | 73 | 3.9 | 81% aa similarity to SH1 ORF26 (YP_271883) and also to putative protein 17 of HHIV-2 (AFD02298); |
23 | 12458–12697 | HhPH1_gp23 | 79 | 4.8 | 78% aa similarity to SH1 capsid protein VP13 (ORF27, YP_271884) and also to VP13 of HHIV-2 (AFD02299). Predicted coil-coil domain. Predicted C-terminal transmembrane domain (Phobius). |
24 | 12701–15064 | HhPH1_gp24 | 787 | 3.9 | Capsid protein VP2 (ORF24). 75% aa similarity to SH1 VP2 (ORF28, YP_271885) and to VP2 of HHIV-2 (AFD02300); ZOD2009_19133 of Hap. paucihalophilus (ZP_08046189). |
25 | 15065–15961 | HhPH1_gp25 | 298 | 4.5 | Putative capsid protein VP5 (ORF25). 81% aa similarity to SH1 VP5 (ORF29, YP_271886) and to HHIV-2 VP5 (AFD02301); HlacAJ_19807 of Hbf lacisalsi AJ5; ZOD2009_19133 of Hap. paucihalophilus. |
26 | 15964–16446 | HhPH1_gp26 | 160 | 4.6 | 73% aa similarity to SH1 capsid protein VP10 (ORF30, YP_271887) and to VP10 of HHIV-2 (AFD02302); ZOD2009_19138 of Hap. paucihalophilus; HlacAJ_19802 of Hbf. lacisalsi. Predicted C-terminal transmembrane domain (TMHMM). |
27 | 16446–16895 | HhPH1_gp27 | 149 | 4.2 | Capsid protein VP9 (ORF27). 94% aa similarity to SH1 VP9 (ORF31, YP_271888) and to ZOD2009_19143 of Hap. paucihalophilus (ZP_08046191) |
28 | 16908–17921 | HhPH1_gp28 | 337 | 4.3 | Capsid protein VP3 (ORF28). 91% aa similarity to SH1 VP3 (ORF32, YP_271889) and to NJ7G_2365 of Natrinema sp. J7-2 |
29 | 17928–18617 | HhPH1_gp29 | 229 | 4.2 | Capsid protein VP6 (ORF29). 83% aa similarity to SH1 VP6 (ORF33, YP_271890). Also to NJ7G_3194 of Natrinema sp. J7-2 and Hmuk_0476 of Halomicrobium mukohataei. Predicted carboxypeptidase regulatory-like domain (CarboxypepD_reg, pfam13620) |
30 | 18614–18943 | HhPH1_gp30 | 109 | 4.9 | 71% aa similarity to SH1 ORF34 (YP_271891) and to putative protein 27 of HHIV-2 (AFD02308); Predicted signal sequence (signalP) |
31 | 19054–19176c | HhPH1_gp31 | 40 | 5.0 | Two CxxC motifs. No homolog in SH1 or HHIV-2 |
32 | 19173–19289c | HhPH1_gp32 | 38 | 4.1 | 68% aa similarity to SH1 ORF37 (YP_271894) |
33 | 19286–19552c | HhPH1_gp33 | 88 | 5.3 | 58% aa similarity to SH1 ORF39 (YP_271896) and to HHIV-2 putative protein 29 (AFD02310). Four CxxC motifs |
34 | 19549–19731c | HhPH1_gp34 | 60 | 7.0 | Contains CxxC motif. No homolog in SH1 or HHIV-2 |
35 | 19728–20219c | HhPH1_gp35 | 163 | 5.6 | 93% aa similarity to SH1 ORF 41 (YP_271898) and to putative protein 30 of HHIV-2 (AFD02311) |
36 | 20216–21415c | HhPH1_gp36 | 399 | 5.0 | 95% aa similarity to SH1 ORF 42 (YP_271899) and to putative protein 31 of HHIV-2 (AFD02312) |
37 | 21419–21778c | HhPH1_gp37 | 119 | 4.1 | 91% aa similarity to SH1 ORF43 (YP_271900) and to putative protein 32 of HHIV-2 (AFD02313) |
38 | 21762–23006c | HhPH1_gp38 | 414 | 4.2 | 83% aa similarity to SH1 ORF44 (YP_271901) and to putative protein 33 of HHIV-2 (AFD02314). Predicted coil-coil and helix-turn-helix domains |
39 | 23003–23158c | HhPH1_gp39 | 51 | 6.5 | 69% aa similarity to SH1 ORF45 (YP_271902) |
40 | 23161–23370c | HhPH1_gp40 | 69 | 3.5 | 74% aa similarity to SH1 ORF46 (YP_271903), and 55% similarity to putative protein 35 of HHIV-2 (AFD02316) |
41 | 23422–23586c | HhPH1_gp41 | 54 | 7.6 | 86% aa similarity to SH1 ORF47 (YP_271904); Contains 2 CxxC motifs, and shows similarity to protein domain family PF14206. Arginine-rich |
42 | 23583–24023c | HhPH1_gp42 | | 4.8 | 77% aa similarity to SH1 ORF48 (YP_271905) and to putative protein 36 of HHIV-2 (AFD02317); Hham1_14540 of Hcc. hamelinensis (ZP_11271999); PhiCh1p72 of Natrialba phage PhiCh1 (NP_665989). DUF4326 (pfam14216) family domain |
43 | 24020–24538c | HhPH1_gp43 | 172 | 4.7 | 79% aa similarity to SH1 ORF49 (YP_271906), and 56% similarity to putative protein 37 of HHIV-2 (AFD02318) |
44 | 24535–25053c | HhPH1_gp44 | 172 | 4.3 | 92% aa similarity to SH1 ORF50 (YP_271907), and 72% similarity to putative protein 38 of HHIV-2 (AFD02319) |
45 | 25050–25277c | HhPH1_gp45 | 75 | 4.3 | No homolog in SH1 or HHIV-2. |
46 | 25274–25387c | HhPH1_gp46 | 37 | 4.8 | No homolog in SH1 or HHIV-2 |
47 | 25533–25904 | HhPH1_gp47 | 123 | 4.3 | 61% aa similarity to SH1 ORF51 (YP_271908); 66% similarity to putative protein 39 of HHIV-2 (AFD02320). Predicted COG1342 domain (DNA binding/helix-turn-helix) |
48 | 25901–26092c | HhPH1_gp48 | 63 | 4.9 | Contains CxxC motif. No homolog in SH1 or HHIV-2 |
49 | 26089–27648c | HhPH1_gp49 | 506 | 4.0 | 81% aa similarity to SH1 ORF55 (YP_271912) (but only in the N-terminal half). Homolog of virus structural protein VP18 of HHIV-2 (AFD02323) |
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