Genome-Scale Metabolic Modeling of Archaea Lends Insight into Diversity of Metabolic Function

Table 1

Model Statistics. The elementary units of genome-scale metabolic models are genes, metabolites, and reactions. These models consist of (1) a metabolic network that describes the connections between metabolites through reactions (often organized by metabolic subsystem), (2) gene-protein-reaction rules that map the gene dependencies of reactions, and (3) connection to their environment through exchange transport reactions.

Organism	Model	Genes	Metabolites	Reactions	Transport	Subsystems	Citation
H. salinarum	iOG490	490	557	711	111	NA	[13]
	iOG478	478	545	664	97	NA	[14]
M. acetivorans	iVS941	941	708	705	71	60	[15]
	iMB745	745	715	818	69	30	[16]
	iMAC868	868	707	839	91	31	[17]
	iST807	807	733	759	70	30	[18]
M. barkeri	iAF692	692	558	619	88	8	[19]
	iMG746	746	718	815	74	31	[20]
M. hungatei	iMhu428	428	639	721	41	29	[21]
M. jannaschii	iTS436	436	510	609	1	113	[22]
M. maripaludis	iMM518	518	605	570	49	117	[23]
M. mazei	iSS85	NA	74	85	5	NA	[6]
M. smithii	iMsi385	385	582	525	35	NA	[24]
N. pharaonis	iOG654	654	597	683	88	NA	[25]
S. solfataricus	iTU515	515	705	718	58	65	[26]