Bacterial Diversity and Antibiotic Resistance Genes Associated with the Different Farming Systems of Black Tiger Shrimp (Penaeus monodon) in Bangladesh
Table 1
Antibiotic resistance gene profile in different shrimp farming systems.
Culture system
Sample ID
Name of the antibiotic groups and associated resistance genes
Sulphonamide
Chloramphenicol
Quinolones
Aminoglycoside
Ciprofloxacin
Tetracycline
Beta-lactams
Macrolide
Bacitracin
Vancomycin
Trimethoprim
sul1
sul3
cat
cfr
qnrA
gyrA
aacA1
gyrA(c)
tetA
tetC
tet32
tetX
blaTem-1
mecA
ermB
ere(A)
bacA
vanR
dfrA1
Cluster
SS
P
ND
P
ND
ND
ND
ND
ND
ND
P
ND
ND
ND
ND
ND
ND
ND
P
ND
SG
P
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
SW
P
ND
P
ND
ND
ND
ND
ND
P
P
ND
ND
ND
ND
ND
ND
ND
P
ND
Semi-intensive
SS
ND
ND
P
ND
ND
ND
ND
ND
P
P
ND
P
ND
ND
ND
ND
ND
ND
ND
SG
P
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
SW
ND
ND
P
ND
ND
ND
ND
P
P
P
ND
P
ND
ND
ND
P
ND
P
ND
Improved extensive
SS
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
P
ND
SG
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
SW
P
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
P
ND
ND
P
Extensive
SS
P
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
SG
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
SW
P
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
ND
P
ND
ND
ND
SG = shrimp gut, SW = shrimp water (water of the shrimp culture pond), SS = shrimp sediment (sediment of the shrimp culture pond), P = positive, and ND = not detected.
