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OA Related Genes |
Gene name | Gene abbreviation | Sequence (5′ 3′) | Annealing temp | Amplicon length | NCBI Number |
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Cartilage matrix | | | | | |
Collagen, Type I, Alpha 1 | Col1a1 | F: CAACCGCTTCACCTACAGC | 60 | 101 | AK236626 |
R: TTTTGTATTCGATCACTGTCTTGCC |
Collagen, Type II, Alpha 1 | Col2a1 | F: GAGAGGTCTTCCTGGCAAAG | 60 | 118 | AF201724.1 |
R: AAGTCCCTGGAAGCCAGAT |
Aggrecan | Acan | F: TGCAGGTGACCATGGCC | 60 | 79 | AF201722b |
R: CGGTAATGGAACACAACCCCT |
SRY (sex determining gene region Y) box-9 | Sox9 | F: CAGGGCTCTGTGCTCTACTCC | 60 | 230 | NM_213843.1 |
R: GGGTTACGGTCTTTCTTCGGT |
Osteopontin | Opn | F: CCGCAGCCAGGAGCAGTC | 55 | 214 | NM_214023.1 |
R: GTTGATCTCAGAAGACGCACTCTC |
Cartilage oligometric matrix protein | Comp | F: GGCTGGAAGGACAAGACATC | 55 | 82 | XM_003123529.1 |
R: CCTCATAGAACCGCACTCTG |
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Degradative enzymes & inhibitors | | | | | |
Matrix metalloprotease-1 | Mmp1 | F: TGATGGACCTGGAGGAAACC | 59 | 131 | NM_001166229 |
R: GAGCAGCCACACGATACAAG |
Matrix metalloprotease-3 | Mmp3 | F: GATGTTGGTTACTTCAGCAC | 50 | 197 | NM_001166308.1 |
R: ATCATTATGTCAGCCTCTCC |
Matrix metalloprotease-13 | Mmp13 | F: CCAAAGGCTACAACTTGTTTCTTG | 60 | 77 | AF069643 |
R: TGGGTCCTTGGAGTGGTCAA |
TIMP metallopeptidase inhibitor-1 | Timp1 | F: CCTCGTACCAGCGTTATG | | | |
R: CGTTCCACAGTTGTCCAG | 59 | 177 | NM_213857.1 |
TIMP metallopeptidase inhibitor-2 | Timp2 | F: ATATACGAGAACACCAGACC | | | |
| R: GGAATGATTACAACGGATGC | 59 | 152 | AK237154.1 |
ADAM metallopeptidase with thrombospondin Type 1 motif 5 | Adamts5 | F: CGCTGCCACCACACTCAA R: CGTAGTGCTCCTCATGGTCATCT | 60 | 80 | NM_007038.3 |
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Inflammatory response | | | | | |
Indian hedgehog | Ihh | F: CAGCGGGCGCTATGAAGGCA | 60 | 140 | XM_001925486.1 |
R: GGTCCTTGCAGCGCTGGGTC |
Transforming growth factor β | Tgfb | F: GGAGTGGCTGTCCTTTGATGT | 60 | 117 | NM_214015.1 |
R: AGTGTGTTATCTTTGCTGTCA |
Nitric oxide synthase 2, inducible | Inos | F: TGAATTTGTCAACCTGTATTAC | 53 | 82 | NM_001143690.1 |
R: CTTTGTTACCGCTTCCAC |
Chitinase-3-like protein 1 | Chi3l1 | F: TGACGCTCTATGACACAC | 62 | 194 | NM_001001540 |
R: GGCTAGGTCCAGTCCATC |
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Cell proliferation & apoptosis | | | | | |
Caspase-8 | Casp8 | F: TGGGCAAACAGATGCCACAACCT | 60 | 153 | NM_001031779.2 |
R: CCCCTTCAATCTAGCCCACCCCC |
Fas (TNF receptor superfamily, member 6) | Fas | F: TAGAGTTTGTGATGGAGAA | 53 | 107 | NM_213839.1 |
R: ATTGAGAAGTGTGACAGA |
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