Research Article | Open Access
Direct Spectrophotometric Assay for Benzaldehyde Lyase Activity
Benzaldehyde lyase from Pseudomonas fluorescens Biovar I. (BAL, EC 126.96.36.199) is a versatile catalyst for the organic synthesis of chiral α-hydroxy ketones. To allow fast assessment of enzyme activity, a direct spectrophotometric assay is desirable. Here, a new robust and easy-to-handle assay based on UV absorption is presented. The assay developed is based on the ligation of the α-hydroxy ketone (R)-2,2′-furoin from 2-furaldehyde. A robust assay with direct monitoring of the product is facilitated with a convenient concentration working range minimising experimental associated with low concentrations.
Benzaldehyde lyase (BAL; EC 188.8.131.52) from Pseudomonas fluorescens Biovar I (BAL, EC 184.108.40.206) belongs to the group of thiamine diphosphate- (ThDP-) dependent enzymes . It is a versatile catalyst for the enantioselective synthesis of a broad variety of α-hydroxy ketones by both C–C bond coupling and kinetic resolution. These chiral compounds are important building blocks for the synthesis of several drugs and natural products [2–8].
According to its synthetic importance and application prospects, several methods for the determination of BAL activity have already been established. Most prominent are the uses of high pressure liquid chromatography (HPLC) or a combination of gas chromatography and mass spectroscopy (GC-MS) [3, 9]. However, these methods are material- and time-consuming when it comes to sample preparation and performance of measurements, and are therefore hardly applicable to the monitoring of fast reaction courses or large sample batches. For these purposes, establishment of spectrometric methods is highly desirable.
In fact, the BAL-catalysed carboligation of benzaldehyde into benzoin has been determined via spectrophotometry at a wavelength of 250 nm. However, both benzaldehyde and benzoin revealed a considerable absorption at this wavelength resulting in an overlap for which a correction had to be carried out . The same applies for the spectrophotometric determination of the condensation of furaldehyde into furoin at a wavelength of 277 nm. Fluorescence spectroscopy at an excitation wavelength of 360 nm and an emission wavelength of 470 nm was used for the investigation of the carboligation of 3,5-dimethylbenzaldehyde (DMBA) into 3,3′,5,5′-tetramethoxybenzoin (TMB) . However, the linear range of this assay strongly depends on the pathway of the excitation light . Furthermore, the method is restricted to this substrate-product pair suffering from the same limited solubility as benzoin (see below). Generally, fluorescence spectroscopy is more difficult in handling and not as widely available.
BAL activity with regard to cleavage of α-hydroxy ketones into aldehydes, can be determined with an indirect spectrophotometric assay. In a successive reaction, the product benzaldehyde is reduced by horse liver alcohol dehydrogenase (EC 220.127.116.11.) and the accompanying consumption of the cofactor NADH is measured at a wavelength of 340 nm . However, even with addition of cosolvents such as DMSO or PEG the application of this method is strongly limited by the low solubility of the substrates such as benzoin . In addition, the coupling of a second reaction adds to the error of activity determination.
To overcome the limitations imposed by the established assays we explored the direct monitoring of (R)-2,2′-furoin formation from 2-furaldehyde (Figure 1). This would allow to overcome the limitations of solubility, as maximum solubility of 2-furaldehyde in water (0.86 mol L−1) is orders of magnitude higher than benzoin or benzaldehyde (60 mmol L−1; http://www.inchem.org/). Thus, addition of co-solvents, which is known to interfere with activity, is not required [12, 13].
2. Materials and Methods
2-furaldehyde (FA, CAS 98-01-1), furoin (FO, (R) 1,2-di(furan-2-yl)-2-hydroxyketone, CAS 92921-36-3), and thiamine pyrophosphate (ThDP, CAS 154-87-0) were obtained from Sigma Aldrich. The furaldehyde was distilled and stored under argon atmosphere. Furoin was used without further purification. The solutions of furoin in water and buffer were obtained after filtration using polyamide filter with 0.45 μm pore size.
Cells of E. coli SG13009/BALHis containing the overexpressed enzyme were kindly provided by Martina Pohl (Institute of Biotechnology 2, Research center Jülich, Germany). The cells were disrupted and BAL was purified via immobilized metal ion chromatography (Ni-NTA column) as described in the literatures [3, 8]. Purified BAL was lyophilised and stored at −20°C until use.
Potassium phosphate solution at a concentration of 50 mmol L−1 and pH 8 containing 2.5 mmol L−1 MgSO4 and 0.25 mmol L−1 ThDP was used as buffer. Under these conditions half life of BAL is known to be several hours [10, 13] excluding interference within the assay time span of minutes.
Initial rate measurement were carried out in 96-well microtiter plates. Typically, 5 mmol L−1 of substrate were reacted with 20 μL BAL at 30°C for 2.3 min in which the absorbance was measured every 7 sec (Power Wave HT, BioTek Instruments). The slope of linear regression was taken as activity. All measurements were carried out in triplicate, standard deviation (STD) is given as error. One unit activity is defined as the amount of enzyme that catalyses the formation of 1 μmol of furoin per min. at 30°C and pH 8.
3. Results and Discussion
Analysis of the components in the reaction mixture showed that all absorption maxima overlap considerably. The absorbance at 320 nm was chosen as the best compromise between sensitivity and interference. At 320 nm the extinction coefficient for 2-furaldehyde is more than one magnitude lower than for furoin (Figure 2). For comparison, the absorption at 278 nm as the peak maxima for both furoin and furaldehyde were determined. At 278 nm a low sensitivity is obtained as the absorbance is similar for both furaldehyde and furoin. Furthermore, a linear response is obtained only for concentrations below 0.3 mmol L−1. Whereas, a high sensitivity can be obtained at 320 nm in which furaldehyde absorption depends linearly on concentration up to 40 mmol L−1. The linear sensitivity for furoin is up to 1 mmol L−1 at 320 nm and 0.5 mmol L−1 at 278 nm. The extinction coefficient for furaldehyde at 320 nm (0.06 L mmol−1 cm−1) is much lower compared to furoin (1.67 L mmol−1 cm−1), therefore the decrease of absorbance is at least 10-fold lower than the increase.
The activity assay for measurement of absorbance at 320 nm increases the concentration range up to 40 mmol L−1 whereas the measurement of absorbance at 278 is not possible above 0.3 mmol L−1 due to detection limit of UV absorption (Figure 3). The activity as a function of substrate concentration for measurement at 320 nm can be described using a hyperbolic Michaelis-Menten-type equation with a of 11.8 ± 0.4 U mg−1 and of 11.0 ± 1.0 mmol L−1 (Figure 4).
4. Concluding Remarks
In summary, a robust and sensitive activity assay based on UV-spectrometry is proposed. It allows for relatively high concentrations of aldehyde thereby minimising experimental error. Furthermore, choosing a wavelength outside absorption maxima minimises interference with the other assay components.
|GS-MS:||Gas chromatography-mass spectroscopy|
|HPLC:||High-pressure liquid chromatography|
|NADH:||Nicotinamide adenine dinucleotide|
Conflict of Interests
The authors have declared no conflict of interests.
The paper is funded by Deutsche Forschungsgemeinschaft via the DFG Graduate School 1166 BioNoCo-Biocatalysis in Non-Conventional Solvent (http://www.bionoco.org/). The authors thank Professor Martina Pohl (Institute of Biotechnology 2, Research Center Jülich, Germany) for providing the E.coli SG13009/BALHis cells containing the recombinant BAL.
- B. González and R. Vicuńa, “Benzaldehyde lyase, a novel thiamine -requiring enzyme, from Pseudomonas fluorescens Biovar I,” Journal of Bacteriology, vol. 171, no. 5, pp. 2401–2405, 1989.
- A. S. Demir, M. Pohl, E. Janzen, and M. Müller, “Enantioselective synthesis of hydroxy ketones through cleavage and formation of acyloin linkage: enzymatic kinetic resolution via C—C bond cleavage,” Journal of the Chemical Society: Perkin Transactions 1, no. 8, pp. 633–635, 2001.
- E. Janzen, M. Müller, D. Kolter-Jung, M. M. Kneen, M. J. McLeish, and M. Pohl, “Characterization of benzaldehyde lyase from Pseudomonas fluorescens: a versatile enzyme for asymmetric C—C bond formation,” Bioorganic Chemistry, vol. 34, no. 6, pp. 345–361, 2006.
- M. B. Ansorge-Schumacher, L. Greiner, F. Schroeper, S. Mirtschin, and T. Hischer, “Operational concept for the improved synthesis of (R)-3,3'-furoin and related hydrophobic compounds with benzaldehyde lyase,” Biotechnology Journal, vol. 1, no. 5, pp. 564–568, 2006.
- T. Hischer, D. Gocke, M. Fernandez et al., “Stereoselective synthesis of novel benzoins catalysed by benzaldehyde lyase in a gel-stabilised two-phase system,” Tetrahedron, vol. 61, no. 31, pp. 7378–7383, 2005.
- A. S. Demir, O. Sesenoglu, P. Dünkelmann, and M. Müller, “Benzaldehyde lyase-catalyzed enantioselective carboligation of aromatic aldehydes with mono- and dimethoxy acetaldehyde,” Organic Letters, vol. 5, no. 12, pp. 2047–2050, 2003.
- R. J. Mikolajek, A. C. Spiess, M. Pohl, S. Lamare, and J. Büchs, “An activity, stability and selectivity comparison of propioin synthesis by thiamine diphosphate-dependent enzymes in a solid/gas bioreactor,” ChemBioChem, vol. 8, no. 9, pp. 1063–1070, 2007.
- M. Pohl, M. Müller, and A. Demir, “Nucleotide sequence encoding a benzaldehyde lyase, and process for stereoselectively synthesizing 2-hydroxyketones,” US Patent 7,045,334 B2, May 16,2006.
- P. Ayhan, I. Simsek, B. Cifci, and A. S. Demir, “Benzaldehyde lyase catalyzed enantioselective self and cross condensation reactions of acetaldehyde derivatives,” Organic and Biomolecular Chemistry, vol. 9, no. 8, pp. 2602–2605, 2011.
- A. van den Wittenboer, Stabilitäten der Benzaldehydlyase aus Pseudomonas fluorescens und der Carbonylreduktase aus Candida parapsilosis in wässrig-organischen Zweiphasensystemen, Ph.D. dissertation, RWTH Aachen University, 2010.
- M. Pohl, “Personal communication,” 2010.
- T. Schmidt, M. Zavrel, A. Spieß, and M. B. Ansorge-Schumacher, “Biochemical peculiarities of benzaldehyde lyase from Pseudomonas fluorescencens Biovar I in the dependency on pH and cosolvent concentration,” Bioorganic Chemistry, vol. 37, no. 3, pp. 84–84, 2009.
- S. Shanmuganathan, D. Natalia, A. van den Wittenboer, C. Kohlmann, L. Greiner, and P. Domínguez De María, “Enzyme-catalyzed C—C bond formation using 2-methyltetrahydrofuran (2-MTHF) as (co)solvent: efficient and bio-based alternative to DMSO and MTBE,” Green Chemistry, vol. 12, no. 12, pp. 2240–2245, 2010.
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