Research Article

A Transcriptome Post-Scaffolding Method for Assembling High Quality Contigs

Table 1

Data sets description.

OrganismOriginal number of contigsPreassembled methodsReferenceSource

D. frontalis [9]20,966Newbler 2.5Tribolium castaneum GAFI01
(http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=GAFI01)

D. ponderosae [10]20,540Newbler 2.5Tribolium castaneum GAFX01
(http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=GAFX01)

D. citri [11]27,821Velvet v.1.0.19,
Oases v.0.1.19
Acyrthosiphon pisum GACJ01
(http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=GACJ01)

I. ricinus [12]8,685Abyss v.1.3.4,
Trinity v.2012-06
Cap3 v.1999
Ixodes scapularis GADI01
(http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=GADI01)