Research Article

Mining Association Rules in Dengue Gene Sequence with Latent Periodicity

Algorithm 1

RECFIN algorithm.
Objective: To Mine PAR
Input: Gene sequence of Dengue
   virus D, minimum support s and confidence c.
Output: Periodic Association Rules
Method:
 (1) Construction of Suffix tree
  (a) Read the given input.
  (b) Affix the $ symbol at the end of
   the sequence. ($ = n + 1) where is the
   number of elements in the sequence.
  (c) Call Suffixtree(D, $);
 (2) Call reccal(sp, pi); where sp = starting
   position, pi = periodic interval
 (3) Call polycheck();
 (4) Generate the periodic association rules
   for predicting the type of Dengue virus
   serotype. Call PAR();
Procedure Suffixtree(D, $)
  (1) Initialize root.
  (2) For each child node with element e till $
  (3) If is already marked
      Goto reccal(sp, pi)
   Else
   Create new node
  (4) Mark the Index value.
Procedure reccal(sp,  pi)
  (1) Count the element and subsequence pattern.
  (2) Increment the count value by 1 when
   the new pattern is arrived.
  (3) Maintain the minimum support &
   confidence threshold.
Procedure polycheck()
  (1) For each occurrence pattern find the
   presence of palindrome.
  (2) Find the reverse of the occurrence pattern.
  (3) If palindrome Mark as “Palindrome”.
Procedure PAR()
  (1) Calculate the frequent patterns with s and c.
  (2) Generate PAR.