Table of Contents
Dataset Papers in Science
Volume 2013 (2013), Article ID 196492, 7 pages
http://dx.doi.org/10.1155/2013/196492
Dataset Paper

Molecular Data for the Sea Turtle Population in Brazil

Laboratório de Biodiversidade e Evolução Molecular (LBEM), Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais (UFMG), Avenida Antônio Carlos 6627, 31270-010 Belo Horizonte, MG, Brazil

Received 3 June 2013; Accepted 20 June 2013

Academic Editors: G. Hill and S. Kleinsteuber

This dataset has been dedicated to the public domain using the CC0 waiver.

Dataset http://dx.doi.org/10.1155/2013/196492/dataset

Dataset

Dataset Item 1 (Table). The detailed genetic data obtained. The column popID is an identification number of each population, given by a combination of morphology and mtDNA and, therefore, previous to the analysis with nuclear loci. Number 1 refers to E. imbricata × C. caretta hybrids, number 2 to E. imbricata × L. olivacea hybrids, number 3 to E. imbricata “pure” samples, number 4 to C. caretta “pure” samples, number 5 to L. olivacea × C. caretta hybrids, number 6 to L. olivacea “pure” samples, and number 7 to C. mydas “pure” samples. The column Sample Code is an identification code for each sample. The codes starting with R0XX are deposit codes in the DNA Bank DB-LBEM at the Federal University of Minas Gerais. The column Hybrid/Species is an identification code that summarizes the results obtained with the nuclear data and classifies the sample in a category of hybrid or pure individual. The code EixCc refers to an E. imbricata × C. caretta hybrid; Ei refers to an E. imbricata pure individual; Cc refers to a C. caretta pure individual, EixCcxCm refers to an E. imbricata × C. caretta × C. mydas hybrid, EixCm refers to an E. imbricata × C. mydas hybrid, EixLo refers to an E. imbricata × L. olivacea hybrid, LoxCc refers to an L. olivacea × C. caretta hybrid, Lo refers to an L. olivacea pure individual, and Cm refers to a C. mydas pure individual. The column Morphology gives the species classification based on morphology. Codes are the same as in the column Hybrid/Species. The column mtDNA refers to the mitochondrial results from the locus D-loop. Codes are the same as in the column Hybrid/Species. The columns 6 to 23 identify the alleles found for each of the loci typed. Columns OR1 Allele 1 and OR1 Allele 2 identify the two alleles for the microsatellite loci OR1. Each column is one allele present in this locus. Columns OR3 Allele 1 and OR3 Allele 2 are the alleles for the microsatellite loci OR3. Columns CC1G02 Allele 1 and CC1G02 Allele 2 are the alleles for the microsatellite loci CC1G02. Columns CC1G03 Allele 1 and CC1G03 Allele 2 are the alleles for the microsatellite loci CC1G03. Columns RAG1 Allele 1 and RAG1 Allele 2 are the alleles for the locus RAG1. Columns CMOS Allele 1 and CMOS Allele 2 are the alleles for the locus CMOS. Columns RAG2 Allele 1 and RAG2 Allele 2 are the alleles for the locus RAG2. Columns R35 Allele 1 and R35 Allele 2 are the alleles for the locus R35. Columns BDNF Allele 1 and BDNF Allele 2 are the alleles for the locus BDNF. No data is shown by a question mark. In the table, the asterisk (*) indicates samples and/or loci with introgression with E. imbricata, the double asterisk (**) indicates samples and/or loci with introgression with C. caretta, and the triple asterisk (***) indicates samples and/or loci with introgression with L. olivacea.

  • Column 1: popID
  • Column 2: Sample Code
  • Column 3: Hybrid/Species
  • Column 4: Morphology
  • Column 5: mtDNA
  • Column 6: OR1 Allele 1
  • Column 7: OR1 Allele 2
  • Column 8: OR3 Allele 1
  • Column 9: OR3 Allele 2
  • Column 10: CC1G02 Allele 1
  • Column 11: CC1G02 Allele 2
  • Column 12: CC1G03 Allele 1
  • Column 13: CC1G03 Allele 2
  • Column 14: RAG1 Allele 1
  • Column 15: RAG1 Allele 2
  • Column 16: CMOS Allele 1
  • Column 17: CMOS Allele 2
  • Column 18: RAG2 Allele 1
  • Column 19: RAG2 Allele 2
  • Column 20: R35 Allele 1
  • Column 21: R35 Allele 2
  • Column 22: BDNF Allele 1
  • Column 23: BDNF Allele 2

Dataset Item 2 (Table). The haplotypes (alleles) found. The column Haplotype refers to the haplotype identification code. The column Gene indicates the locus which the haplotype (allele) was found. A total of five codes are found in this column: BDNF, R35, RAG1, RAG2, and CMOS, which represent the name of the nuclear locus sequenced. The column Species refers to which species the haplotype is typical. The code Lo refers to L. olivacea, Cm refers to C. mydas, Ei refers to E. imbricata, Cc refers to C. caretta, Ei/Cc refers to a haplotype found in both E. imbricata and C. caretta, and Ei/Lo refers to a haplotype found in E. imbricata and L. olivacea. The last column, GenBank Accession Number, refers to the number of identification in the GenBank.

  • Column 1: Haplotype
  • Column 2: Gene
  • Column 3: Species
  • Column 4: GenBank Accession Number

Dataset Item 3 (Table). The GenBank accession numbers for each sample. No data is shown by a question mark. Each gene is represented by two columns, corresponding to the two alleles found.

  • Column 1: Sample Code
  • Column 2: RAG1 Allele 1
  • Column 3: RAG1 Allele 2
  • Column 4: CMOS Allele 1
  • Column 5: CMOS Allele 2
  • Column 6: RAG2 Allele 1
  • Column 7: RAG2 Allele 2
  • Column 8: R35 Allele 1
  • Column 9: R35 Allele 2
  • Column 10: BDNF Allele 1
  • Column 11: BDNF Allele 2

Dataset Item 4 (Nucleotide Sequences). Sequences with the BDNF exon alignment. The five aligned sequences are identified as haplotype number followed by the GenBank reference number.

Dataset Item 5 (Nucleotide Sequences). Sequences with the CMOS exon alignment. The eleven aligned sequences are identified as haplotype number followed by the GenBank reference number.

Dataset Item 6 (Nucleotide Sequences). Sequences with the R35 intron alignment. The thirteen aligned sequences are identified as haplotype number followed by the GenBank reference number.

Dataset Item 7 (Nucleotide Sequences). Sequences with the RAG1 exon alignment. The nine aligned sequences are identified as haplotype number followed by the GenBank reference number.

Dataset Item 8 (Nucleotide Sequences). Sequences with the RAG2 exon alignment. The six aligned sequences are identified as haplotype number followed by the GenBank reference number.