Table 2: Distribution of mapped reads to different transcript types and gene regions with reference Canis lupus familiaris genome build version CanFam3.1.

Uniquely mappedNonspecifically mappedMapped reads
Number of readsNumber of readsNumber of reads%

Total exon reads75,8831,30577,18834.05
Exon-exon reads32,38576833,15314.63
Exon-intron reads6,210356,2452.75
Total intron reads107,8182,280110,09848.57
Total gene reads222,2964,388226,684100.00