Table of Contents
International Journal of Bacteriology
Volume 2016 (2016), Article ID 7146470, 8 pages
http://dx.doi.org/10.1155/2016/7146470
Research Article

Genotyping of Mycobacterium tuberculosis Isolates from Hormozgan Province of Iran Based on 15-Locus MIRU-VNTR and Spoligotyping

1Department of Microbiology, School of Medicine, Tehran University of Medical Sciences, Tehran, Iran
2Department of Microbiology, School of Medicine, Golestan University of Medical Sciences, Gorgan, Iran
3Department of Biology, Faculty of Natural Sciences, University of Tabriz, Tabriz, Iran
4Department of Microbiology, School of Medicine, Shahid Beheshti University of Medical Sciences, Tehran, Iran
5Applied Microbiology Research Centre, Baqiyatallah University of Medical Sciences, Tehran, Iran
6Molecular Medicine Research Center, Hormozgan University of Medical Sciences, Bandar Abbas, Iran
7Thorax Research Center, Tehran University of Medical Sciences, Tehran, Iran

Received 3 May 2016; Accepted 25 September 2016

Academic Editor: Sam R. Telford

Copyright © 2016 Samin Zamani et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Linked References

  1. C. Dye, G. P. Garnett, K. Sleeman, and B. G. Williams, “Prospects for worldwide tuberculosis control under the WHO DOTS strategy. Directly observed short-course therapy,” The Lancet, vol. 352, no. 9144, pp. 1886–1891, 1998. View at Publisher · View at Google Scholar · View at Scopus
  2. M. K. Lalor, J. Greig, S. Allamuratova et al., “Risk factors associated with default from multi- and extensively drug-resistant tuberculosis treatment, Uzbekistan: a retrospective cohort analysis,” PLoS ONE, vol. 8, no. 11, Article ID e78364, 2013. View at Publisher · View at Google Scholar · View at Scopus
  3. W. Yu-Feng, J. Chao, and C. Xian-Feng, “Drug-resistant tuberculosis can be predicted by Mycobacterial interspersed repetitive unit locus,” Frontiers in Microbiology, vol. 6, 2015. View at Publisher · View at Google Scholar · View at Scopus
  4. World Health Organization, Fact Sheet About Tuberculosis, World Health Organization, Geneva, Switzerland, 2012.
  5. World Health Organization, “G lobal tuberculosis control: epidemiology, strategy, financing,” WHO Report, WHO, Geneva, Switzerland, 2009. View at Google Scholar
  6. Ministry of Health and Medical Education, Iran, Iranian Centre for Disease Control and Prevention, Division of TB and Leprosy Elimination, 2011, http://www.cdc.hbi.ir
  7. A. Ghanbarnezhad, A. Roustazadeh, A. Alizadeh, H. Abbastabar, M. Nazarnezhad, and S. Mohseni, “Spatial distribution of TB and HIV co-infection in south of Iran,” The AYER, vol. 4, pp. 177–183, 2015. View at Google Scholar
  8. A. Raeisi, F. Nikpoor, M. Ranjbar Kahkha, and L. Faraji, “The trend of malaria in IR Iran from 2002 to 2007,” Hakim Research Journal, vol. 12, pp. 35–41, 2009. View at Google Scholar
  9. A.-K. Mueller, J. Behrends, J. Blank, U. E. Schaible, and B. E. Schneider, “An experimental model to study tuberculosis-malaria coinfection upon natural transmission of Mycobacterium tuberculosis and Plasmodium berghei,” Journal of Visualized Experiments, no. 84, article e50829, 2014. View at Publisher · View at Google Scholar · View at Scopus
  10. C. Romagosa, J. Ordi, F. Saute et al., “Seasonal variations in maternal mortality in Maputo, Mozambique: the role of malaria,” Tropical Medicine and International Health, vol. 12, no. 1, pp. 62–67, 2007. View at Publisher · View at Google Scholar · View at Scopus
  11. M. Hawkes, X. Li, M. Crockett et al., “Malaria exacerbates experimental mycobacterial infection in vitro and in vivo,” Microbes and Infection, vol. 12, no. 11, pp. 864–874, 2010. View at Publisher · View at Google Scholar · View at Scopus
  12. M. J. Nasiri, F. Rezaei, S. Zamani et al., “Drug resistance pattern of Mycobacterium tuberculosis isolates from patients of five provinces of Iran,” Asian Pacific Journal of Tropical Medicine, vol. 7, no. 3, pp. 193–196, 2014. View at Publisher · View at Google Scholar · View at Scopus
  13. D. Van Soolingen, K. Kremer, and E. Vynycky, “New perspectives in the molecular epidemiology of tuberculosis,” in Mycobacteria and TB: Issues in Infectious Diseases, S. H. Kaufmann and H. Hahn, Eds., vol. 2, pp. 17–45, Karger, Berlin, Germany, 2003. View at Google Scholar
  14. M. Kato-Maeda and P. M. Small, “How molecular epidemiology has changed what we know about tuberculosis,” Western Journal of Medicine, vol. 172, no. 4, pp. 256–259, 2000. View at Publisher · View at Google Scholar · View at Scopus
  15. P. J. Easterbrook, A. Gibson, S. Murad et al., “High rates of clustering of strains causing tuberculosis in Harare, Zimbabwe: a molecular epidemiological study,” Journal of Clinical Microbiology, vol. 42, no. 10, pp. 4536–4544, 2004. View at Google Scholar
  16. L. S. Cowan, L. Mosher, L. Diem, J. P. Massey, and J. T. Crawford, “Variable-number tandem repeat typing of Mycobacterium tuberculosis isolates with low copy numbers of IS6110 by using mycobacterial interspersed repetitive units,” Journal of Clinical Microbiology, vol. 40, no. 5, pp. 1592–1602, 2002. View at Publisher · View at Google Scholar · View at Scopus
  17. J. D. A. van Embden, M. D. Cave, J. T. Crawford et al., “Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology,” Journal of Clinical Microbiology, vol. 31, no. 2, pp. 406–409, 1993. View at Google Scholar · View at Scopus
  18. P. Supply, E. Mazars, S. Lesjean, V. Vincent, B. Gicquel, and C. Locht, “Variable human minisatellite-like regions in the Mycobacterium tuberculosis genome,” Molecular Microbiology, vol. 36, no. 3, pp. 762–771, 2000. View at Publisher · View at Google Scholar · View at Scopus
  19. W. W. Jiao, I. Mokrousov, Z. S. Gui et al., “Evaluation of new variable-number tandem-repeat systems for typing Mycobacterium tuberculosis with Beijing genotype isolates from Beijing, China,” Journal of Clinical Microbiology, vol. 46, no. 3, pp. 1045–1049, 2008. View at Publisher · View at Google Scholar · View at Scopus
  20. S. Christianson, J. Wolfe, P. Orr et al., “Evaluation of 24 locus MIRU-VNTR genotyping of Mycobacterium tuberculosis isolates in Canada,” Tuberculosis, vol. 90, no. 1, pp. 31–38, 2010. View at Publisher · View at Google Scholar · View at Scopus
  21. J. Kamerbeek, L. Schouls, A. Kolk et al., “Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology,” Journal of Clinical Microbiology, vol. 35, no. 4, pp. 907–914, 1997. View at Google Scholar · View at Scopus
  22. R. A. Skuce, T. P. McCorry, J. F. McCarroll et al., “Discrimination of Mycobacterium tuberculosis complex bacteria using novel VNTR-PCR targets,” Microbiology, vol. 148, no. 2, pp. 519–528, 2002. View at Publisher · View at Google Scholar · View at Scopus
  23. E. Mazars, S. Lesjean, A.-L. Banuls et al., “High-resolution minisatellite-based typing as a portable approach to global analysis of Mycobacterium tuberculosis molecular epidemiology,” Proceedings of the National Academy of Sciences of the United States of America, vol. 98, no. 4, pp. 1901–1906, 2001. View at Publisher · View at Google Scholar · View at Scopus
  24. H. L. Rieder, T. M. Chonde, H. Myking et al., The Public Health Service National Tuberculosis Reference Laboratory and the National Laboratory Network: Minimum Requirements, Role and Operation in a Low-Income Country, International Union against Tuberculosis and Lung Disease (IUATLD), Paris, France, 1998.
  25. D. Darban-Sarokhalil, A. A. I. Fooladi, Z. Bameri, M. J. Nasiri, and M. M. Feizabadi, “Cytochrome CYP141: a new target for direct detection of Mycobacterium tuberculosis from clinical specimens,” Acta Microbiologica et Immunologica Hungarica, vol. 58, no. 3, pp. 211–217, 2011. View at Publisher · View at Google Scholar · View at Scopus
  26. P. Supply, C. Allix, S. Lesjean et al., “Proposal for standardization of optimized mycobacterial interspersed repetitive unit-variable-number tandem repeat typing of Mycobacterium tuberculosis,” Journal of Clinical Microbiology, vol. 44, no. 12, pp. 4498–4510, 2006. View at Publisher · View at Google Scholar · View at Scopus
  27. S. Zamani, M. Aflaki, A. A. I. Fooladi et al., “MIRU-VNTR analysis of the Mycobacterium tuberculosis isolates from three provinces of Iran,” Scandinavian Journal of Infectious Diseases, vol. 45, no. 2, pp. 124–130, 2013. View at Publisher · View at Google Scholar · View at Scopus
  28. P. R. Hunter and M. A. Gaston, “Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity,” Journal of Clinical Microbiology, vol. 26, no. 11, pp. 2465–2466, 1988. View at Google Scholar · View at Scopus
  29. C. Allix-Béguec, D. Harmsen, T. Weniger, P. Supply, and S. Niemann, “Evaluation and strategy for use of MIRU-VNTRplus, a multifunctional database for online analysis of genotyping data and phylogenetic identification of Mycobacterium tuberculosis complex isolates,” Journal of Clinical Microbiology, vol. 46, no. 8, pp. 2692–2699, 2008. View at Publisher · View at Google Scholar · View at Scopus
  30. L. Nabyonga, D. P. Kateete, F. A. Katabazi et al., “Determination of circulating Mycobacterium tuberculosis strains and transmission patterns among pulmonary TB patients in Kawempe municipality, Uganda, using MIRU-VNTR,” BMC Research Notes, vol. 4, article 280, 2011. View at Publisher · View at Google Scholar · View at Scopus
  31. A. Zhou, M. Nawaz, X. Xue, P. C. Karakousis, Y. Yao, and J. Xu, “Molecular genotyping of Mycobacterium tuberculosis in Xi'an, China, using MIRU-VNTR typing,” International Journal of Tuberculosis and Lung Disease, vol. 15, no. 4, pp. 517–522, 2011. View at Google Scholar · View at Scopus
  32. N. Gaukrodger, D. Thompson, S. J. Sarginson, J. G. Magee, and A. D. Sails, “Improved differentiation of Mycobacterium tuberculosis isolates in the north of England using additional variable number tandem repeat loci,” British Journal of Biomedical Science, vol. 68, no. 1, pp. 23–28, 2011. View at Publisher · View at Google Scholar · View at Scopus
  33. T. B. Johansen, I. Olsen, M. R. Jensen, U. R. Dahle, G. Holstad, and B. Djønne, “New probes used for IS1245 and IS1311 restriction fragment length polymorphism of Mycobacterium avium subsp. avium and Mycobacterium avium subsp. hominissuis isolates of human and animal origin in Norway,” BMC Microbiology, vol. 7, article 14, 2007. View at Publisher · View at Google Scholar · View at Scopus
  34. M. Haeili, D. Darban-Sarokhalil, A. A. I. Fooladi et al., “Spoligotyping and drug resistance patterns of Mycobacterium tuberculosis isolates from five provinces of Iran,” MicrobiologyOpen, vol. 2, no. 6, pp. 988–996, 2013. View at Publisher · View at Google Scholar · View at Scopus
  35. M. Asgharzadeh, M. Khakpour, T. Z. Salehi, and H. S. Kafil, “Use of mycobacterial interspersed repetitive unit-variable-number tandem repeat typing to study Mycobacterium tuberculosis isolates from East Azarbaijan Province of Iran,” Pakistan Journal of Biological Sciences, vol. 10, no. 21, pp. 3769–3777, 2007. View at Publisher · View at Google Scholar · View at Scopus
  36. S. Vatani, A. D. Khosravi, M. M. Feizabadi, and A. Jolodar, “Study of genetic diversity in Mycobacterium tuberculosis by using mycobacterial interspersed repetitive unit: variable number tandem repeat typing in Khuzestan province, Iran,” African Journal of Microbiology Research, vol. 5, no. 12, pp. 1549–1556, 2011. View at Publisher · View at Google Scholar · View at Scopus
  37. A. Ayaz, Z. Hasan, S. Jafri et al., “Characterizing Mycobacterium tuberculosis isolates from Karachi, Pakistan: drug resistance and genotypes,” International Journal of Infectious Diseases, vol. 16, no. 4, pp. e303–e309, 2012. View at Publisher · View at Google Scholar · View at Scopus
  38. D. Alland, G. E. Kalkut, A. R. Moss et al., “Transmission of tuberculosis in New York City. An analysis by DNA fingerprinting and conventional epidemiologic methods,” The New England Journal of Medicine, vol. 330, no. 24, pp. 1710–1716, 1994. View at Publisher · View at Google Scholar · View at Scopus
  39. L. Ferrazoli, M. Palaci, L. R. M. Marques et al., “Transmission of tuberculosis in an endemic urban setting in Brazil,” International Journal of Tuberculosis and Lung Disease, vol. 4, no. 1, pp. 18–25, 2000. View at Google Scholar · View at Scopus