Computational Analysis Suggests That Lyssavirus Glycoprotein Gene Plays a Minor Role in Viral Adaptation

Table 2

Recombination detection in glycoprotein gene of lyssavirus by using 3SEQ.

P	Q	C	P-value	Dunn Sidak	Breakpoints
M81058	AY987478	AF233275	0	2.08𝐸−08	432–440, 1080–1089	456–496, 1080–1089
M81060	AY987478	AF233275	1𝐸−12	1.31𝐸−07	432–440, 1080–1089	456–496, 1080–1089
AY987478	M81059	AY237121	0	2.81𝐸−11	441–455, 1077–1079
AY987478	M81058	AY237121	0	2.13𝐸−13	441–455, 1077–1079
AY987478	M81060	AY237121	0	1.13𝐸−13	441–455, 1077–1079
AY987478	AF233275	AY237121	1.3𝐸−10	1.88𝐸−05	432–455, 1068–1089	465–518, 1068–1089
AY987478	L04522	AY237121	1.1𝐸−08	1.48𝐸−03	627–638, 1077–1089	663–666, 1077–1089
AY987478	AF325489	AY237121	0	2.71𝐸−15	700-701, 1077–1097
AY987478	U11755	AY237121	3.2𝐸−10	4.42𝐸−05	717–719, 1077–1082	729–734, 1077–1082
AY987478	U11736.2	AY237121	3.3𝐸−09	4.61𝐸−04	717–719, 1077–1082	729–734, 1077–1082
AY987478	DQ849071	AY237121	6.1𝐸−11	8.61𝐸−06	736-737, 1077–1079
AY987478	DQ076097	AY237121	1.2𝐸−10	1.69𝐸−05	630–638, 1077–1089	699–701, 1077–1089
AY987478	DQ076099	AY237121	9𝐸−12	1.31𝐸−06	700-701, 1077–1089	714–719, 1077–1089
AY987478	L04523	AY237121	2.2𝐸−09	3.04𝐸−04	736-737, 1077–1079
AY987478	X69122	AY237121	4𝐸−12	6.00𝐸−07	666–669, 1032–1049	666–669, 1077–1089
AY987478	AY009098	AY237121	4𝐸−12	4.99𝐸−07	693–701, 1077–1079	705–711, 1077–1079
AY987478	AY009099	AY237121	4𝐸−12	4.99𝐸−07	693–701, 1077–1079	705–711, 1077–1079
AY987478	DQ849072	AY237121	2.1𝐸−11	3.02𝐸−06	693–701, 1077–1079	705–711, 1077–1079
AY987478	AJ871962	AY237121	1𝐸−12	7.29𝐸−08	750–794, 1077–1089
AY987478	AF325487	AY237121	0	1.36𝐸−08	780–794, 1077–1079
AY987478	L40426	AY237121	4.8𝐸−11	6.71𝐸−06	750–794, 1077–1089
AY987478	AF401285	AY237121	0	9.99𝐸−10	780–795, 1077–1079
AY987478	AY257983	AY237121	2.3𝐸−11	3.27𝐸−06	780–795, 1077–1079
AY987478	AY257980	AY237121	0	5.70𝐸−09	750–761, 1077–1079	780–795, 1077–1079
AY987478	AY257982	AY237121	5.9𝐸−11	8.33𝐸−06	780–795, 1032–1043	780–795, 1077–1079
AY987478	DQ767897	AY237121	1𝐸−07	1.46𝐸−02	759–767, 972–974
AY987478	U52946	AY237121	5.3𝐸−08	7.43𝐸−03	741–748, 900-901	741–748, 918–938
AY987478	U03766	AY237121	2.4𝐸−07	3.27𝐸−02	717–719, 876–889	717–719, 894–914
AY987478	U03765	AY237121	2.6𝐸−07	3.55𝐸−02	717–719, 876–889	717–719, 894–914
AY237121	AF233275	AY987478	0	1.38𝐸−39	432–452, 1077–1089
AY237121	DQ074978	AY987478	0	1.16𝐸−38	432–452, 1077–1089
AY237121	L04522	AY987478	0	7.15𝐸−25	627–647, 1065–1089
AY237121	DQ076097	AY987478	0	1.47𝐸−08	630–647, 1056–1058	630–647, 1065–1089
AY237121	U03767	AY987478	1𝐸−11	1.42𝐸−06	630–638, 1041–1058	630–638, 1065–1079
AY237121	AJ871962	AY987478	0	6.36𝐸−20	642–647, 1041–1058	642–647, 1065–1089
AY237121	X69122	AY987478	0	3.16𝐸−26	642–647, 1041–1049	654–659, 1041–1049
AY237121	L40426	AY987478	0	1.38𝐸−17	642–647, 1041–1058	642–647, 1065–1089
AY237121	M81058	AY987478	0	9.60𝐸−21	441–452, 1065–1079	618–710, 1065–1079
AY237121	M81060	AY987478	0	6.49𝐸−23	441–452, 1065–1079	618–710, 1065–1079
AY237121	D14873	AY987478	0	6.82𝐸−17	685–701, 1065–1085	705–710, 1065–1085
AY237121	D16330	AY987478	0	5.23𝐸−17	685–701, 1065–1085	705–710, 1065–1085
AY237121	AY257980	AY987478	5.3𝐸−08	7.49𝐸−03	705–710, 1041–1046
AY237121	DQ849071	AY987478	1.9𝐸−09	2.68𝐸−04	708–710, 1041–1046
AY237121	L04523	AY987478	1.3𝐸−07	1.85𝐸−02	708–710, 1041–1046
AY237121	DQ076099	AY987478	0	1.07𝐸−08	634–647, 1056–1058	634–647, 1065–1089
AY237121	U11755	AY987478	1𝐸−12	1.60𝐸−07	630–647, 1056–1058	630–647, 1065–1082
AY237121	U11736.2	AY987478	0	2.29𝐸−08	630–647, 1056–1058	630–647, 1065–1082
AY237121	DQ767897	AY987478	1.7𝐸−09	2.37𝐸−04	708–710, 1017–1022	708–710, 1041–1046
AY237121	AY009098	AY987478	1.8𝐸−08	2.58𝐸−03	705–710, 1041–1046	736-737, 1041–1046
AY237121	AY009099	AY987478	1.8𝐸−08	2.58𝐸−03	705–710, 1041–1046	736-737, 1041–1046
AY237121	AF325487	AY987478	7.5𝐸−10	1.06𝐸−04	705–710, 1041–1046	732–734, 1041–1046
AY237121	U03766	AY987478	1.2𝐸−09	1.75𝐸−04	630–638, 1041–1058	630–638, 1065–1079
AY237121	U03765	AY987478	2.3𝐸−10	3.26𝐸−05	630–638, 1041–1058	630–638, 1065–1079
AY237121	M81059	AY987478	0	1.27𝐸−18	441–452, 993–998	441–452, 1017–1034
AY237121	AF325490	AY987478	9.2𝐸−09	1.30𝐸−03	705–710, 993–995	705–710, 1017–1019
AY237121	AF325491	AY987478	7𝐸−12	9.93𝐸−07	705–710, 993–995
AY237121	AF325492	AY987478	9.6𝐸−09	1.34𝐸−03	700-701, 993–995	705–710, 993–995
AY237121	DQ849072	AY987478	1.3𝐸−07	1.83𝐸−02	705–710, 924–935	705–710, 945–950
AY237121	AY009100	AY987478	3.4𝐸−07	4.62𝐸−02	708–710, 885–887	708–710, 924–938
AY237121	AF401285	AY987478	6.4𝐸−09	8.95𝐸−04	736-737, 883–887
AY237121	AY257983	AY987478	9.9𝐸−08	1.38𝐸−02	732–734, 883–887	732–734, 1041–1046
M81059	AY987478	DQ074978	0	9.05𝐸−10	519–522, 1080–1089
M81058	AY987478	DQ074978	0	4.12𝐸−09	519–522, 1080–1089
M81060	AY987478	DQ074978	0	2.80𝐸−08	519–522, 1080–1089
AY009100	M81059	DQ849071	2𝐸−08	2.80𝐸−03	0–3, 108–119
AY009100	M81058	DQ849071	3𝐸−08	4.20𝐸−03	0–3, 108–119
AY009100	M81060	DQ849071	1.2𝐸−07	1.70𝐸−02	0–3, 108–119
AY009100	AJ871962	DQ849071	2.2𝐸−07	3.02𝐸−02	0–3, 108–110
AY009100	M81059	L04523	9.6𝐸−09	1.34𝐸−03	0–3, 108–119
AY009100	M81058	L04523	1.5𝐸−08	2.04𝐸−03	0–3, 108–119
AY009100	M81060	L04523	6.7𝐸−08	9.37𝐸−03	0–3, 108–119	0–3, 139–161
AY009100	AJ871962	L04523	1.3𝐸−07	1.88𝐸−02	0–3, 108–110

Note: P and Q are putative parent sequences, and C is the putative child sequence in the recombination.