Table of Contents
International Journal of Evolutionary Biology
Volume 2011 (2011), Article ID 250154, 9 pages
http://dx.doi.org/10.4061/2011/250154
Research Article

New Insights on the Evolutionary History of Aphids and Their Primary Endosymbiont Buchnera aphidicola

1Área de Genómica y Salud, Centro Superior de Investigación en Salud Pública (CSISP), Avenida de Cataluña 21, 46020 Valencia, Spain
2CIBER Epidemiología y Salud Pública (CIBERESP), Spain
3Departament de Genètica, Institut Cavanilles de Biodiversitat i Biologia Evolutiva, Universitat de València, Apartado Postal 22085, 46071 Valencia, Spain

Received 13 October 2010; Accepted 24 December 2010

Academic Editor: Hiromi Nishida

Copyright © 2011 Vicente Pérez-Brocal et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Linked References

  1. J. Sandstrom and J. Pettersson, “Amino acid composition of phloem sap and the relation to intraspecific variation in pea aphid (Acyrthosiphon pisum) performance,” Journal of Insect Physiology, vol. 40, no. 11, pp. 947–955, 1994. View at Publisher · View at Google Scholar · View at Scopus
  2. N. A. Moran, M. A. Munson, P. Baumann, and H. Ishikawa, “A molecular clock in endosymbiotic bacteria is calibrated using the insect hosts,” Proceedings of the Royal Society B, vol. 253, no. 1337, pp. 167–171, 1993. View at Google Scholar · View at Scopus
  3. C. D. von Dohlen and N. A. Moran, “Molecular data support a rapid radiation of aphids in the Cretaceous and multiple origins of host alternation,” Biological Journal of the Linnean Society, vol. 71, no. 4, pp. 689–717, 2000. View at Publisher · View at Google Scholar · View at Scopus
  4. J. J. Wernegreen and N. A. Moran, “Evidence for genetic drift in endosymbionts (Buchnera): analyses of protein-coding genes,” Molecular Biology and Evolution, vol. 16, no. 1, pp. 83–97, 1999. View at Google Scholar · View at Scopus
  5. L. Klasson and S. G. E. Andersson, “Evolution of minimal-gene-sets in host-dependent bacteria,” Trends in Microbiology, vol. 12, no. 1, pp. 37–43, 2004. View at Publisher · View at Google Scholar · View at Scopus
  6. J. J. Wernegreen, A. O. Richardson, and N. A. Moran, “Parallel acceleration of evolutionary rates in symbiont genes underlying host nutrition,” Molecular Phylogenetics and Evolution, vol. 19, no. 3, pp. 479–485, 2001. View at Publisher · View at Google Scholar · View at Scopus
  7. T. Itoh, W. Martin, and M. Nei, “Acceleration of genomic evolution caused by enhanced mutation rate in endocellular symbionts,” Proceedings of the National Academy of Sciences of the United States of America, vol. 99, no. 20, pp. 12944–12948, 2002. View at Publisher · View at Google Scholar · View at Scopus
  8. J. J. Wernegreen, “Genome evolution in bacterial endosymbionts of insects,” Nature Reviews Genetics, vol. 3, no. 11, pp. 850–861, 2002. View at Publisher · View at Google Scholar · View at Scopus
  9. A. Mira and N. A. Moran, “Estimating population size and transmission bottlenecks in maternally transmitted endosymbiotic bacteria,” Microbial Ecology, vol. 44, no. 2, pp. 137–143, 2002. View at Publisher · View at Google Scholar · View at Scopus
  10. The International Aphid Genomics Consortium, “Genome aequence of the pea aphid Acyrthosiphon pisum,” PLoS Biology, vol. 8, no. 2, Article ID e1000313, 2010. View at Google Scholar
  11. O. E. Heie, “Palaeontology and phylogeny,” in Aphids: Their Biology, Natural Enemies and Control, A. K. Minks and P. Harrewijn, Eds., vol. 2A, pp. 367–391, Elsevier, Amsterdam, The Netherlands, 1987. View at Google Scholar
  12. E. Zuckerkandl and L. Pauling, “Molecular disease, evolution, and genetic heterogeneity,” in Horizons in Biochemistry, M. Kasha and B. Pullman, Eds., pp. 189–225, Academic Press, New York, NY, USA, 1962. View at Google Scholar
  13. E. Zuckerkandl and L. Pauling, “Evolutionary divergence and convergence in proteins,” in Evolving Genes and Proteins, V. Bryson and H. J. Vogel, Eds., pp. 97–166, Academic Press, New York, NY, USA, 1965. View at Google Scholar
  14. M. A. Clark, N. A. Moran, and P. Baumann, “Sequence evolution in bacterial endosymbionts having extreme base compositions,” Molecular Biology and Evolution, vol. 16, no. 11, pp. 1586–1598, 1999. View at Google Scholar · View at Scopus
  15. V. Pérez-Brocal, R. Gil, S. Ramos et al., “A small microbial genome: the end of a long symbiotic relationship?” Science, vol. 314, no. 5797, pp. 312–313, 2006. View at Publisher · View at Google Scholar · View at Scopus
  16. W. Wojciechowski, Studies on the Systematic System of Aphids (Homoptera, Aphidinea), Uniwersytet Slaski, Katowice, Poland, 1992.
  17. D. Martinez-Torres, C. Buades, A. Latorre, and A. Moya, “Molecular systematics of aphids and their primary endosymbionts,” Molecular Phylogenetics and Evolution, vol. 20, no. 3, pp. 437–449, 2001. View at Publisher · View at Google Scholar · View at Scopus
  18. B. Ortiz-Rivas, A. Moya, and D. Martínez-Torres, “Molecular systematics of aphids (Homoptera: Aphididae): new insights from the long-wavelength opsin gene,” Molecular Phylogenetics and Evolution, vol. 30, no. 1, pp. 24–37, 2004. View at Publisher · View at Google Scholar · View at Scopus
  19. B. Ortiz-Rivas and D. Martínez-Torres, “Combination of molecular data support the existence of three main lineages in the phylogeny of aphids (Hemiptera: Aphididae) and the basal position of the subfamily Lachninae,” Molecular Phylogenetics and Evolution, vol. 55, no. 1, pp. 305–317, 2010. View at Publisher · View at Google Scholar · View at Scopus
  20. S. Shigenobu, H. Watanabe, M. Hattori, Y. Sakaki, and H. Ishikawa, “Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS,” Nature, vol. 407, no. 6800, pp. 81–86, 2000. View at Publisher · View at Google Scholar · View at Scopus
  21. I. Tamas, L. Klasson, B. Canbäck et al., “50 million years of genomic stasis in endosymbiotic bacteria,” Science, vol. 296, no. 5577, pp. 2376–2379, 2002. View at Publisher · View at Google Scholar · View at Scopus
  22. R. C. H. J. van Ham, J. Kamerbeek, C. Palacios et al., “Reductive genome evolution in Buchnera aphidicola,” Proceedings of the National Academy of Sciences of the United States of America, vol. 100, no. 2, pp. 581–586, 2003. View at Publisher · View at Google Scholar · View at Scopus
  23. K. Tamura, J. Dudley, M. Nei, and S. Kumar, “MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0,” Molecular Biology and Evolution, vol. 24, no. 8, pp. 1596–1599, 2007. View at Publisher · View at Google Scholar · View at Scopus
  24. R. C. Edgar, “MUSCLE: multiple sequence alignment with high accuracy and high throughput,” Nucleic Acids Research, vol. 32, no. 5, pp. 1792–1797, 2004. View at Publisher · View at Google Scholar · View at Scopus
  25. F. Tajima, “Simple methods for testing the molecular evolutionary clock hypothesis,” Genetics, vol. 135, no. 2, pp. 599–607, 1993. View at Google Scholar · View at Scopus
  26. G. Deckert, P. V. Warren, T. Gaasterland et al., “The complete genome of the hyperthermophilic bacterium Aquifex aeolicus,” Nature, vol. 392, no. 6674, pp. 353–358, 1998. View at Publisher · View at Google Scholar · View at Scopus
  27. R. Gil, F. J. Silva, E. Zientz et al., “The genome sequence of Blochmannia floridanus: comparative analysis of reduced genomes,” Proceedings of the National Academy of Sciences of the United States of America, vol. 100, no. 16, pp. 9388–9393, 2003. View at Publisher · View at Google Scholar · View at Scopus
  28. N. A. Moran, “Accelerated evolution and Muller's rachet in endosymbiotic bacteria,” Proceedings of the National Academy of Sciences of the United States of America, vol. 93, no. 7, pp. 2873–2878, 1996. View at Publisher · View at Google Scholar · View at Scopus
  29. X. Xia and Z. Xie, “DAMBE: software package for data analysis in molecular biology and evolution,” Journal of Heredity, vol. 92, no. 4, pp. 371–373, 2001. View at Google Scholar · View at Scopus
  30. A. T. Marques, A. Antunes, P. A. Fernandes, and M. J. Ramos, “Comparative evolutionary genomics of the HADH2 gene encoding Aβ-binding alcohol dehydrogenase/17β-hydroxysteroid dehydrogenase type 10 (ABAD/HSD10),” BMC Genomics, vol. 7, article 202, 2006. View at Publisher · View at Google Scholar · View at Scopus
  31. M. G. Fain and P. Houde, “Multilocus perspectives on the monophyly and phylogeny of the order Charadriiformes (Aves),” BMC Evolutionary Biology, vol. 7, article 35, 2007. View at Publisher · View at Google Scholar · View at Scopus
  32. M. Farfán, D. Miñana-Galbis, M. C. Fusté, and J. G. Lorén, “Divergent evolution and purifying selection of the flaA gene sequences in Aeromonas,” Biology Direct, vol. 4, article 23, 2009. View at Publisher · View at Google Scholar · View at Scopus
  33. M. Daly, L. C. Gusmão, A. J. Reft, and E. Rodríguez, “Phylogenetic signal in mitochondrial and nuclear markers in sea anemones (cnidaria, Actiniaria),” Integrative and Comparative Biology, vol. 50, no. 3, pp. 371–388, 2010. View at Publisher · View at Google Scholar
  34. D. L. Swofford, PAUP*. Phylogenetic analysis using parsimony (*and other methods). Version 4, Sinauer Associates, Sunderland, Mass, USA, 2002.
  35. S. Guindon and O. Gascuel, “A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood,” Systematic Biology, vol. 52, no. 5, pp. 696–704, 2003. View at Publisher · View at Google Scholar · View at Scopus
  36. D. Posada, “jModelTest: phylogenetic model averaging,” Molecular Biology and Evolution, vol. 25, no. 7, pp. 1253–1256, 2008. View at Publisher · View at Google Scholar · View at Scopus
  37. F. Abascal, R. Zardoya, and D. Posada, “ProtTest: selection of best-fit models of protein evolution,” Bioinformatics, vol. 21, no. 9, pp. 2104–2105, 2005. View at Publisher · View at Google Scholar · View at Scopus
  38. J. P. Huelsenbeck and F. Ronquist, “MRBAYES: Bayesian inference of phylogenetic trees,” Bioinformatics, vol. 17, no. 8, pp. 754–755, 2001. View at Google Scholar · View at Scopus
  39. R Development Core Team, R: A Language and Environment for Statistical Computing, R Foundation for Statistical Computing, Vienna, Austria, 2010, http://www.R-project.org.
  40. V. F. Eastop, “Biotypes of aphids,” in Perspectives in Applied Biology, A. D. Lowe, Ed., vol. 51 of Bulletin of the Entomological Society of New Zealand, pp. 40–51, 1973. View at Google Scholar
  41. O. E. Heie, “Aphid ecology in the past and a new view on the evolution of Macrosiphini,” in Individuals, Populations and Patterns in Ecology, S. R. Leather, A. D. Watt, N. J. Mills, and K. F. A. Walters, Eds., pp. 409–418, Intercept, Andover, UK, 1994. View at Google Scholar
  42. O. E. Heie, “The evolutionary history of aphids and a hypothesis on the coevolution of aphids and plants,” Bollettino di Zoologia Agraria e di Bachicoltura, vol. 28, pp. 149–155, 1996. View at Google Scholar
  43. L. Gómez-Valero, A. Latorre, and F. J. Silva, “The evolutionary fate of nonfunctional DNA in the bacterial endosymbiont Buchnera aphidicola,” Molecular Biology and Evolution, vol. 21, no. 11, pp. 2172–2181, 2004. View at Publisher · View at Google Scholar · View at Scopus
  44. H. Ochman, S. Elwyn, and N. A. Moran, “Calibrating bacterial evolution,” Proceedings of the National Academy of Sciences of the United States of America, vol. 96, no. 22, pp. 12638–12643, 1999. View at Publisher · View at Google Scholar · View at Scopus