Ectopic Gene Conversions in the Genome of Ten Hemiascomycete Yeast Species
Table 8
GO terms associated with biological processes for the ohnologs and paralogs of S. cerevisiae.
GO term
Cluster frequency
Background frequency
-value
Ohnologs
Biological regulation
21.9%
13.8%
Regulation of biological process
18.0%
11.3%
Regulation of cellular process
16.8%
10.5%
External encapsulating structure organization and biogenesis
6.4%
2.8%
Cell wall organization and biogenesis
6.4%
2.8%
Protein amino acid phosphorylation
4.0%
1.4%
Cellular polysaccharide biosynthetic process
2.0%
0.5%
Polysaccharide biosynthetic process
2.0%
0.5%
Carbohydrate biosynthetic process
2.7%
0.9%
Cellular carbohydrate metabolic process
5.2%
2.3%
Carbohydrate metabolic process
5.5%
2.5%
Paralogs
Transposition
32.8%
1.3%
Transposition, RNA-mediated
32.8%
1.3%
Carbohydrate transport
5.2%
0.5%
Monosaccharide transport
4.0%
0.3%
Hexose transport
4.0%
0.3%
Thiamin and derivative metabolic process
3.2%
0.3%
Thiamin biosynthetic process
2.8%
0.2%
Thiamin and derivative biosynthetic process
2.8%
0.3%
Thiamin metabolic process
2.8%
0.3%
Telomere maintenance via recombination
2.8%
0.3%
Amino acid catabolic process
3.6%
0.5%
Cellular response to nitrogen levels
1.6%
0.1%
. Frequencies were calculated from 1100 ohnologs, 250 paralogs, and 7159 background genes. Only the twelve most significant results for each type of genes are shown.
