Resource Review
Cross-Chip Probe Matching Tool: A Web-Based Tool for Linking Microarray Probes within and across Plant Species
Table 2
Comparing
microarray vendor and CCPMT mappings.
| Type of match | Affymetrix
AG | Affymetrix
ATH1 | Operon | CATMA | AFGC |
| Number of probes per array type | 8297 | 22810 | 29954 | 24576 | 19108 | Nil entries from vendor
(no mapping for these probes) | 141 | 250 | 936 | 2969 | 2823 | Absent-vendor; present-blast | 0 | 0 | 0 | 0 | 1 | Present-vendor; absent-blast | 850 | 930 | 2335 | 2990 | 10952 | Many-vendor; one-blast | 124 | 584 | 0 | 30 | 117 | One-vendor; many-blast | 338 | 896 | 480 | 408 | 368 | Exact match
| 6932 | 20193
| 26138 | 19551
| | Percentage of the vendor mapping numbers | 84% | 89% | 87% | 80% | 34% |
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