Soybean Genomics: Developments through the Use of Cultivar “Forrest”
Figure 6
Description of chromosome 18 resources at SoyGD (a). The
current GMOD representation of 50 Mbp of the 51.5 Mbp chromosome 18 (linkage
group G) in SoyGD (a). shows the build 3 version of the chromosome
(cursor), anchored contigs (top row, blue), DNA markers (second row of features,
red), QTL in the region (third row, burgundy), MTP2 clones (B, H, and E fourth
row, dark blue). Not shown here were BAC clones, ESTs, BAC end sequences, and
gene models (b) shows the build 4 representation of 10 Mbp of the 51.5 Mbp
chromosome 18 in SoyGD. Shown are the chromosome (cursor), DNA markers (top row
of features, red); QTL in the region (second row, blue); coalesced clones
(purple) comprising the anchored contigs (third row, green); BAC end sequences
(fourth row black); BESs encoding gene fragments (fifth row, puce);
EST hybridizations to MTP2BH (sixth row gold); MTP4BH clones (seventh row, dark
blue); BESs derived SSR (eighth row, green); EST
hybridizations inferred on build 4 from clones also in MTP2BH (ninth row,
blue); WGS trace file matches from MegaBlast (tenth and last row, light blue).
It is recommended for readers to visit updated site
http://bioinformatics.siu.edu/ to see a full detailed color version and a build
5 view. The gaps between contigs will be filled in build 5 by contig merges
suggested by BESs-SSRs and contig end overlap data.
