Bioinformatic Tools for Inferring Functional Information from Plant Microarray Data II: Analysis Beyond Single Gene

Table 4

Proteomics databases available on the internet.

Databse name	Description	URL
RPD	Rice proteome database	http://gene64.dna.affrc.go.jp/RPD/
ANPD	Arabidopsis nucleolar protein database	http://bioinf.scri.sari.ac.uk/cgi-bin/atnopdb/home/
AMPD	Arabidopsis mitochondrial protein database	http://www.plantenergy.uwa.edu.au/applications/ampdb/index.html/
PA-GOSUB	Protein sequences from model organisma, GO assignement and subcellular localization	http://www.cs.ualberta.ca/~bioinfo/PA/GOSUB/
Swiss-Prot	A curated protein sequence database which strives to provide a high level of annotation	http://expasy.org/sprot/
AAindex	Database of various physicochemical and biochemical properties of amino acids and pairs of amino acids	http://www.genome.ad.jp/aaindex/
Prosite	Database of protein domains, families and functional sites, as well as associated patterns and profiles	http://www.expasy.ch/prosite/
PLANT-PIs	Database of information on the distribution and functional properties of protease inhibitors in higher plants	http://www.ba.itb.cnr.it/PLANT-PIs/
GeneFarm	Annotation of Arabidopsis genes and proteins	http://urgi.versailles.inra.fr/Genefarm/