International Journal of Plant Genomics / 2009 / Article / Tab 1

Research Article

Structural Characterization and Expression Analysis of the SERK/SERL Gene Family in Rice (Oryza sativa)

Table 1

OsSERK and OsSERL gene family in rice.

NameClone I Accession numbe Locus I CDS length Protein length ORF length Prime UTR Prime UTR Mol wt No. of intron Genomic Locu Nearest mark

BAC/PACChromosomeAccessioncM
namenumbernumberposition

OsSERL1200981AK111536Loc_Os11g393702511608182721547067733.586.9911OSJNBb0030E2211AC12088491.4G4001
OsSERL 2201844AK066417Loc_Os06g163302500644193516939769308.826.659P0676F106AP00581354.1S2539, C235, P138
OsSERL 3210165AK073972Loc_Os02g496002639324975113155235295.78.078OSJNBa0072H092AP00575129.4C12691, C10187S
OsSERL 4215260AK120541Loc_Os02g141202313620186316029167789.626.610OJ1077_A122AP00399136.8–37.0C2168, S10927S
OsSERL 5210853AK100017Loc_Os1g076302421628188725927668913.906.5910P0583G081AP00328216.4E222S
OsSERL 6211096AK100258Loc_Os06g121202438616185142516367721.095.9710P0638H11/6AP00351334.3Y2587L
OsSERL 7206718AK111771Loc_Os07g123202671678203712650972952.827.1310P0708B048AP00476480.7–82.8S11114, E60162SB
OsSERL 8208902AK111846Loc_Os03g496202507543163269913759976.315.7311OSJNBa0004L113AC133334122.8R2847
OsSERL 9201527AK066118Loc_Os02g183202968607182475239367658.715.4410OSJNBa0018M092AP00553350.3C12706S, C626
OsSERK 1213886AK103038Loc_Os08g077602674624187528651468701.346.2110OSJNBa0054L038AP00516434.6–35.7E60560S, R2976
OsSERK 2210613AK099777Loc_Os04g384802296628188720320768587.336.3110OSJNBa0036B214AL60663668.3E3080S

ystematic designation given to rice SERK clone. ccession number of full-length cDNA sequence from KOME (http://cdna01.dna.affrc.go.jp/cDNA/). ocus ID of each OsSERK and OsSERL gene on rice chromosome psuedomolecules available at TIGR (release 4). ength of complete cDNA sequence in base pairs. ength (number of amino acids (aa)) of the deduced polypeptide. ength of open-reading frame in base pairs. ength of 5 prime and 3 prime UTR in base pairs. olecular weight (Daltons) and isoelectric point (pI) of the deduced polypeptides. umber of introns present within ORF. ame, chromosome number, accession number, and approximate cM position of the BAC/PAC clone in which SERK gene is present. earest marker to the SERK gene.

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