Significance Test and Genome Selection in Bayesian Shrinkage Analysis
Figure 3
Empirical threshold values generated from permutation analysis and the estimated QTL effects (simulated data)and empirical threshold values generated from permutation analysis at (2.5%–97.5%) and (5%–95%) along with the estimated QTL effects (simulated data). Percentiles for the 2.5%–97.5% interval are plotted against the genome location as dashed lines (wider interval). Percentiles of the 5%–95% interval are plotted against the genome location as solid lines (narrower interval). (a) shows the result of “permutation outside the Markov chain” (b) Result of “permutation within the Markov chain” with phenotype reshuffling in every iteration ().
