Local Assemblies of Paired-End Reduced Representation Libraries Sequenced with the Illumina Genome Analyzer in Maize

Table 2

Position overlap between B73 and B14. The numbers of distinct B73 and B14 reads overlapping at the same genomic position (as determined by the B73_RefGen v2.0 reference genome) are shown, including redundant and nonredundant positions.

	B73	B14
Redundant positions
Not overlapping	657,961	421,056
Overlapping	2,367,323
Nonredundant positions
Not overlapping	731,837	407,130
Overlapping	1,616,620