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International Journal of Plant Genomics
Volume 2012 (2012), Article ID 437026, 8 pages
Research Article

Mapping of Micro-Tom BAC-End Sequences to the Reference Tomato Genome Reveals Possible Genome Rearrangements and Polymorphisms

1Faculty of Life and Environmental Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba 305-8572, Japan
2Kazusa DNA Research Institute, 2-6-7 Kazusa-kamatari, Kisarazu 292-0818, Japan
3School of Agriculture, Meiji University, 1-1-1 Higashi-mita, Tama-ku, Kawasaki 214-8571, Japan

Received 10 August 2012; Accepted 18 October 2012

Academic Editor: Pierre Sourdille

Copyright © 2012 Erika Asamizu et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Supplementary Material

Supplementary Table 1: The integrity of the hypothetical BAC contigs was confirmed by linking to the DNA markers on two genetic maps, AMF2 and MMF2.

Supplementary Table 2: SNPs and Indels between Micro-Tom and “Heinz 1706” were identified. Among the SNPs and Indels found, 171,792 were mapped on 12 chromosomes, and 2,635 were mapped on pseudomolecules with no chromosomal information (SL2.40ch00 of the tomato whole-genome shotgun chromosomes).

  1. Supplementary Table 1
  2. Supplementary Table 2