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International Journal of Plant Genomics
Table of Contents
Special Issues
International Journal of Plant Genomics
/
2012
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Article
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Tab 4
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Review Article
SNP Discovery through Next-Generation Sequencing and Its Applications
Table 4
Download information of software used for NGS data.
Software
Source
Bowtie
http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
BWA
http://bio-bwa.sourceforge.net/
SOAP
http://soap.genomics.org.cn/soap3.html#down2
MAQ
http://sourceforge.net/projects/maq/
Novoalign
http://www.novocraft.com/main/index.php
CLC-Bio Genomics
http://www.clcbio.com/index.php?id=1240
SeqManNGen
http://www.dnastar.com/t-products-seqman-ngen.aspx
NextGENe
http://softgenetics.com/NextGENe.html
Mosaik
http://bioinformatics.bc.edu/marthlab/Mosaik
SHRiMP
http://compbio.cs.toronto.edu/shrimp/
Mira
http://sourceforge.net/projects/mira-assembler/files/MIRA/stable/
Cassava
http://www.illumina.com/software/genome_analyzer_software.ilmn
Newbler
http://www.454.com/products/analysis-software/index.asp
Novoalign
http://www.novocraft.com/main/downloadpage.php
Tablet
http://bioinf.scri.ac.uk/tablet/
SNP-VISTA
http://genome.lbl.gov/vista/snpvista/
Samtools
http://sourceforge.net/projects/samtools/
Savant
http://genomesavant.com/savant/download.php
SOAPsnp
http://soap.genomics.org.cn/soapsnp.html
GATK
http://www.broadinstitute.org/gsa/wiki/index.php/
ā
The_Genome_Analysis_Toolkit
SNver
http://snver.sourceforge.net/
MaCH
http://www.sph.umich.edu/csg/abecasis/MACH/
IMPUTE2
http://mathgen.stats.ox.ac.uk/impute/impute_v2.html#
ā
download_impute2
MEGA
http://www.megasoftware.net/
PHYLIP
http://evolution.genetics.washington.edu/phylip.html