International Journal of Plant Genomics / 2017 / Article / Tab 1 / Research Article
Development of SNP Genotyping Assays for Seed Composition Traits in Soybean Table 1 A summary of mutant sources of SNP markers and KASP genotyping assays developed and validated in various genetic materials for different seed composition traits used in the present study.
Trait Marker Assay ID Gene Position Effect on trait Donor checks Reference Oleic acid FAD2-1A_17D MU-HO-1 Glyma10g42470 S117N Improves oil shelf life 17 D [46 ] FAD2-1A_A_Del MU-HO-2 PI603452 [47 ] FAD2-1B_327 MU-HO-3 Glyma20G24530 P137R PI283327 [32 ] FAD2-1B_I143T MU-HO-4 I143T PI578451 [32 ] Linolenic acid FAD3A_Del MU-LL-1 Glyma14g37350 6.4 kb del. Oxidative and flavor instability IA3024 [31 ] FAD3A_Splice MU-LL-2 G810A CX1512-44; SB-01 [48 ] FAD3B_Splice MU-LL-3 Glyma02g39230 G462A IA3024 [49 ] FAD3C_G128E MU-LL-4 Glyma18g06950 G128E CX1512-44; SB-01 [48 ] FAD3C_H304Y MU-LL-5 H304Y A29, IA3024 [49 ] Kunitz trypsin inhibitor KTI MU-KTI-1 Glyma08g45530 Q120 Antinutritional PI 542044 [9 ] Stachyose synthase STS MU-STS-1 Glyma19g40550 33 bp del. Antinutritional SP6A-209 [17 ] Raffinose synthase RS2_W MU-RS2-1 Glyma06g18890 Antinutritional PI 200508 [50 ] RS2_397 MU-RS2-2 T107I Antinutritional 397 [46 ] Lipoxygenase Lox-1 MU-Lox-1 Glyma13g42320 74 bp del. Beany flavor PI 408251 [7 ] Lox-2 MU-Lox-2 Glyma13g42310 H532Q Beany flavor Jinpumkong-2 [8 ] Lox3_G_100 MU-Lox-3 Glyma15g03030 Beany flavor PI 205085; [7 ]
