Table of Contents
Influenza Research and Treatment
Volume 2012 (2012), Article ID 847505, 10 pages
http://dx.doi.org/10.1155/2012/847505
Research Article

Genetic Analysis of Avian Influenza Viruses: Cocirculation of Avian Influenza Viruses with Allele A and B Nonstructural Gene in Northern Pintail (Anas acuta) Ducks Wintering in Japan

1Laboratory of Zoonoses, School of Veterinary Medicine, Kitasato University, Towada 034-8628, Japan
2Animal Health Research Division, Bangladesh Livestock Research Institute, Savar, Dhaka 1341, Bangladesh
3Tokyo University of Agriculture and Technology, Tokyo 183-0057, Japan
4Begin-Sadat Center for Strategic Studies, Bar-Ilan University 52900, Ramat Gan, Israel

Received 21 September 2012; Revised 2 December 2012; Accepted 6 December 2012

Academic Editor: Zichria Zakay-Rones

Copyright © 2012 Alam Jahangir et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Linked References

  1. L. Campitelli, C. Fabiani, S. Puzelli et al., “H3N2 influenza viruses from domestic chickens in Italy: an increasing role for chickens in the ecology of influenza?” Journal of General Virology, vol. 83, no. 2, pp. 413–420, 2002. View at Google Scholar · View at Scopus
  2. Y. Kawaoka, S. Krauss, and R. G. Webster, “Avian-to-human transmission of the PB1 gene of influenza A viruses in the 1957 and 1968 pandemics,” Journal of Virology, vol. 63, no. 11, pp. 4603–4608, 1989. View at Google Scholar · View at Scopus
  3. E. C. J. Claas, A. D. M. E. Osterhaus, R. Van Beek et al., “Human influenza A H5N1 virus related to a highly pathogenic avian influenza virus,” Lancet, vol. 351, no. 9101, pp. 472–477, 1998. View at Publisher · View at Google Scholar · View at Scopus
  4. Y. P. Lin, M. Shaw, V. Gregory et al., “Avian-to-human transmission of H9N2 subtype influenza A viruses: relationship between H9N2 and H5N1 human isolates,” Proceedings of the National Academy of Sciences of the United States of America, vol. 97, no. 17, pp. 9654–9658, 2000. View at Google Scholar · View at Scopus
  5. Y. Guan, K. F. Shortridge, S. Krauss, P. H. Li, Y. Kawaoka, and R. G. Webster, “Emergence of avian H1N1 influenza viruses in pigs in China,” Journal of Virology, vol. 70, no. 11, pp. 8041–8046, 1996. View at Google Scholar · View at Scopus
  6. A. I. Karasin, K. West, S. Carman, and C. W. Olsen, “Characterization of avian H3N3 and H1N1 influenza A viruses isolated from pigs in Canada,” Journal of Clinical Microbiology, vol. 42, no. 9, pp. 4349–4354, 2004. View at Publisher · View at Google Scholar · View at Scopus
  7. J. S. M. Peiris, Y. Guan, D. Markwell, P. Ghose, R. G. Webster, and K. F. Shortridge, “Cocirculation of avian H9N2 and contemporary “human” H3N2 influenza A viruses in pigs in southeastern China: potential for genetic reassortment?” Journal of Virology, vol. 75, no. 20, pp. 9679–9686, 2001. View at Publisher · View at Google Scholar · View at Scopus
  8. W. Ma, A. L. Vincent, M. R. Gramer et al., “Identification of H2N3 influenza A viruses from swine in the United States,” Proceedings of the National Academy of Sciences of the United States of America, vol. 104, no. 52, pp. 20949–20954, 2007. View at Publisher · View at Google Scholar · View at Scopus
  9. D. Shoham, “The modes of evolutionary emergence of primal and late pandemic influenza virus strains from viral reservoir in animals: an interdisciplinary analysis,” Influenza Research and Treatment, vol. 2011, Article ID 861792, 27 pages, 2011. View at Publisher · View at Google Scholar
  10. S. Tong, Y. Li, P. Rivailler et al., “A distinct lineage of influenza A virus from bats,” Proceedings of the National Academy of Sciences of the United States of America, vol. 109, pp. 4269–4274, 2012. View at Google Scholar
  11. Y. Kawaoka and R. G. Webster, “Sequence requirements for cleavage activation of influenza virus hemagglutinin expressed in mammalian cells,” Proceedings of the National Academy of Sciences of the United States of America, vol. 85, no. 2, pp. 324–328, 1988. View at Google Scholar · View at Scopus
  12. H. Hatta, P. Gao, P. Halfmann, and Y. Kawaoka, “Molecular basis for high virulence of Hong Kong H5N1 influenza a viruses,” Science, vol. 293, no. 5536, pp. 1840–1842, 2001. View at Publisher · View at Google Scholar · View at Scopus
  13. Z. Li, H. Chen, P. Jiao et al., “Molecular basis of replication of duck H5N1 influenza viruses in a mammalian mouse model,” Journal of Virology, vol. 79, no. 18, pp. 12058–12064, 2005. View at Publisher · View at Google Scholar · View at Scopus
  14. Z. Li, Y. Jiang, P. Jiao et al., “The NS1 gene contributes to the virulence of H5N1 avian influenza viruses,” Journal of Virology, vol. 80, no. 22, pp. 11115–11123, 2006. View at Publisher · View at Google Scholar · View at Scopus
  15. D. L. Noah, K. Y. Twu, and R. M. Krug, “Cellular antiviral responses against influenza A virus are countered at the posttranscriptional level by the viral NS1A protein via its binding to a cellular protein required for the 3 end processing of cellular pre-mRNAS,” Virology, vol. 307, no. 2, pp. 386–395, 2003. View at Publisher · View at Google Scholar · View at Scopus
  16. S. H. Seo, E. Hoffmann, and R. G. Webster, “Lethal H5N1 influenza viruses escape host anti-viral cytokine responses,” Nature Medicine, vol. 8, no. 9, pp. 950–954, 2002. View at Publisher · View at Google Scholar · View at Scopus
  17. A. Jahangir, Y. Watanabe, O. Chinen et al., “Surveillance of avian influenza viruses in Northern pintails (Anas acuta) in Tohoku District, Japan,” Avian Diseases, vol. 52, no. 1, pp. 49–53, 2008. View at Publisher · View at Google Scholar · View at Scopus
  18. A. Jahangir, S. Ruenphet, S. Ueda et al., “Avian influenza and Newcastle disease viruses from northern pintail in Japan: isolation, characterization and inter-annual comparisons during 2006–2008,” Virus Research, vol. 143, no. 1, pp. 44–52, 2009. View at Publisher · View at Google Scholar · View at Scopus
  19. A. Jahangir, S. Ruenphet, D. Shoham, M. Okamura, M. Nakamaura, and K. Takehara, “Haemagglutinin and neuraminidase characterization of low pathogenic H5 and H7 avian influenza viruses isolated from Northern pintails (Anas acuta) in Japan, with special reference to genomic and biogeographical aspects,” Virus Genes, vol. 40, no. 1, pp. 94–105, 2010. View at Publisher · View at Google Scholar · View at Scopus
  20. E. Hoffmann, J. Stech, Y. Guan, R. G. Webster, and D. R. Perez, “Universal primer set for the full-length amplification of all influenza A viruses,” Archives of Virology, vol. 146, no. 12, pp. 2275–2289, 2001. View at Publisher · View at Google Scholar · View at Scopus
  21. K. Tamura, J. Dudley, M. Nei, and S. Kumar, “MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0,” Molecular Biology and Evolution, vol. 24, no. 8, pp. 1596–1599, 2007. View at Publisher · View at Google Scholar · View at Scopus
  22. S. Liu, K. Ji, J. Chen et al., “Panorama phylogenetic diversity and distribution of type A influenza virus,” PLoS ONE, vol. 4, no. 3, Article ID e5022, 2009. View at Publisher · View at Google Scholar · View at Scopus
  23. S. Ludwig, U. Schultz, J. Mandler, W. M. Fitch, and C. Scholtissek, “Phylogenetic relationship of the nonstructural (NS) genes of influenza A viruses,” Virology, vol. 183, no. 2, pp. 566–577, 1991. View at Publisher · View at Google Scholar · View at Scopus
  24. S. Zohari, P. Gyarmati, P. Thorén et al., “Genetic characterization of the NS gene indicates co-circulation of two sub-lineages of highly pathogenic avian influenza virus of H5N1 subtype in Northern Europe in 2006,” Virus Genes, vol. 36, no. 1, pp. 117–125, 2008. View at Publisher · View at Google Scholar · View at Scopus
  25. Y. Li, Z. Lin, J. Shi et al., “Detection of Hong Kong 97-like H5N1 influenza viruses from eggs of Vietnamese waterfowl,” Archives of Virology, vol. 151, no. 8, pp. 1615–1624, 2006. View at Publisher · View at Google Scholar · View at Scopus
  26. A. Jahangir, S. Ruenphet, D. Shoham, M. Okamura, M. Nakamaura, and K. Takehara, “Phenotypic, genetic, and phylogeographical characterization of avian influenza virus subtype H5N2 isolated from northern pintail (Anas acuta) in Japan,” Virus Research, vol. 145, no. 2, pp. 329–333, 2009. View at Publisher · View at Google Scholar · View at Scopus
  27. Y. Kawaoka, O. T. Gorman, T. Ito et al., “Influence of host species on the evolution of the nonstructural (NS) gene of influenza A viruses,” Virus Research, vol. 55, no. 2, pp. 143–156, 1998. View at Publisher · View at Google Scholar · View at Scopus
  28. R. Chen and E. C. Holmes, “Avian influenza virus exhibits rapid evolutionary dynamics,” Molecular Biology and Evolution, vol. 23, pp. 2336–2341, 2006. View at Google Scholar
  29. L. Duan, L. Campitelli, X. H. Fan et al., “Characterization of low-pathogenic H5 subtype influenza viruses from Eurasia: implications for the origin of highly pathogenic H5N1 viruses,” Journal of Virology, vol. 81, no. 14, pp. 7529–7539, 2007. View at Publisher · View at Google Scholar · View at Scopus
  30. D. Shoham, “Biotic-abiotic mechanisms for long-term preservation and reemergence of influenza type A virus genes,” Progress in Medical Virology, vol. 40, pp. 178–192, 1993. View at Google Scholar · View at Scopus
  31. S. Zohari, P. Gyarmati, A. Ejdersund et al., “Phylogenetic analysis of the non-structural (NS) gene of influenza A viruses isolated from mallards in Northern Europe in 2005,” Virology Journal, vol. 5, article 147, 2008. View at Publisher · View at Google Scholar
  32. E. Spackman, D. E. Stallknecht, R. D. Slemons et al., “Phylogenetic analyses of type A influenza genes in natural reservoir species in North America reveals genetic variation,” Virus Research, vol. 114, no. 1-2, pp. 89–100, 2005. View at Publisher · View at Google Scholar · View at Scopus
  33. Yamashina Institute for Ornithology, Japanese Bird Banding in Recent Years (1961–1985), Bird Migration Research Center, Abiko, Chiba, Japan, 1985.
  34. V. V. Bianki and I. N. Dobrynina, Migrations of Birds in Eastern Europe and Northern Asia, Nauka Press, Moscow, Russia, 1997.
  35. Yamashina Institute for Ornithology, Japanese Bird Banding in Recent Years (1961–2004), Bird Migration Research Center, Abiko, Chiba, Japan, 2004.
  36. C. A. Nicolai, P. L. Flint, and M. L. Wege, “Annual survival and site fidelity of northern pintails banded on the Yukon-Kuskokwim Delta, Alaska,” Journal of Wildlife Management, vol. 69, no. 3, pp. 1202–1210, 2005. View at Publisher · View at Google Scholar · View at Scopus
  37. M. R. Miller, J. Y. Takekawa, J. P. Fleskes, D. L. Orthmeyer, M. L. Casazza, and W. M. Perry, “Spring migration of Northern Pintails from California's Central Valley wintering area tracked with satellite telemetry: routes, timing, and destinations,” Canadian Journal of Zoology, vol. 83, no. 10, pp. 1314–1332, 2005. View at Publisher · View at Google Scholar · View at Scopus
  38. J. Wahlgren, J. Waldenström, S. Sahlin et al., “Gene segment reassortment between American and asian lineages of avian influenza virus from waterfowl in the Beringia area,” Vector-Borne and Zoonotic Diseases, vol. 8, no. 6, pp. 783–790, 2008. View at Publisher · View at Google Scholar · View at Scopus
  39. L. Campitelli, A. Di Martino, D. Spagnolo et al., “Molecular analysis of avian H7 influenza viruses circulating in Eurasia in 1999–2005: detection of multiple reassortant virus genotypes,” Journal of General Virology, vol. 89, no. 1, pp. 48–59, 2008. View at Publisher · View at Google Scholar · View at Scopus
  40. M. D. De Jong, T. T. Thanh, T. H. Khanh et al., “Oseltamivir resistance during treatment of influenza A (H5N1) infection,” New England Journal of Medicine, vol. 353, no. 25, pp. 2667–2672, 2005. View at Publisher · View at Google Scholar · View at Scopus
  41. P. M. Colman, P. A. Hoyne, and M. C. Lawrence, “Sequence and structure alignment of paramyxovirus hemagglutinin- neuraminidase with influenza virus neuraminidase,” Journal of Virology, vol. 67, no. 6, pp. 2972–2980, 1993. View at Google Scholar · View at Scopus
  42. P. Ward, I. Small, J. Smith, P. Suter, and R. Dutkowski, “Oseltamivir (Tamiflu) and its potential for use in the event of an influenza pandemic,” Journal of Antimicrobial Chemotherapy, vol. 55, no. 1, pp. i5–i21, 2005. View at Publisher · View at Google Scholar · View at Scopus
  43. Q. Zhu, H. Yang, W. Chen et al., “A naturally occurring deletion in its NS gene contributes to the attenuation of an H5N1 swine influenza virus in chickens,” Journal of Virology, vol. 82, no. 1, pp. 220–228, 2008. View at Publisher · View at Google Scholar · View at Scopus
  44. J. C. Obenauar, J. Denson, P. K. Mehta et al., “Large-scale sequence analysis of avian influenza isolates,” Science, vol. 311, no. 5767, pp. 1576–1580, 2006. View at Publisher · View at Google Scholar · View at Scopus