| Taxon | Loci used | Source |
| Alismatales | rbcL | Les et al. 1997 [5], Li and Zhou 2009 [13] | Hydrocharitaceae | rbcL, matK | Tanaka et al. 1997 [102] | Hydrocharitaceae
| 18S, rbcL, matK, trnK 5′ intron, rpoB, rpoC1, cob, atp1 | Chen et al. 2012 [14] | Halophila | ITS1, 5.8S, ITS2 | Uchimura et al. 2008 [11] | Halophila | ITS1, 5.8S, ITS2 | Waycott et al. 2002 [103] | Halophila | ITS1, 5.8S, ITS2 | Short et al. 2010 [12] | Halodule | rbcL, phyB, trnH-psbA | Ito and Tanaka 2011 [104] | Zostera | rbcL, matK | Kato et al. 2003 [105] | Zostera | rbcL, trnK, ITS | Les et al. 2002 [106] | All seagrass genera | trnL | Procaccini et al. 1999 [107] | Halodule, Posidonia, Ruppia | trnL, ITS | M. Waycott, pers. comm. |
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