Research Article

Molecular Profiles of Pre- and Postoperative Breast Cancer Tumours Reveal Differentially Expressed Genes

Table 3

Selected genes that are differently expressed between pre- and postoperative samples.

Gene nameAgilent IDDescriptionSAMFold Change
CalledFDR -valMeanRange

CX3CL1 A_24_P390495Chemokine (C-X3-C motif) ligand 1 (CX3CL1), mRNA (NM_002996) 21002.990.90–4.09
CYP2D6 A_23_P143734Cytochrome P450, family 2, subfamily D, polypeptide 6 (CYP2D6), transcript variant 1, mRNA (NM_000106) 18001.650.58–3.55
A_23_P1551231032.081.551.510.46–3.38
CYR61 A_23_P46426Cysteine-rich, angiogenic inducer, 61 (CYR61), mRNA NM_001554 1631.751.654.070.61–12.88
A_24_P3709461961.821.795.510.36–22.80
DUSP1 A_23_P110712Dual specificity phosphatase 1 (DUSP1), mRNA NM_004417 2172.32.203.180.49–12.69
DUSP9 A_24_P417189Dual specificity phosphatase 9 (DUSP9), mRNA NM_001395 7002.121.15–2.88
FOSB A_23_P429998FBJ murine osteosarcoma viral oncogene homolog B (FOSB), transcript variant 1, mRNA NM_006732 2032.112.012.790.96–24.26
MALAT1 A_24_P497244Metastasis associated lung adenocarcinoma transcript 1 (nonprotein coding) (MALAT1), noncoding RNA NR_002819 3003.541.31–9.97
MAPK3 A_23_P37910Mitogen-activated protein kinase 3 (MAPK3), transcript variant 1, mRNA (NM_002746) 421.701.302.010.40–2.55
NFRκBA_23_P24485nuclear factor related to kappaB binding protein (NFRκB), transcript variant 2, mRNA (NM_006165) 1831.951.791.610.63–3.25
RAB17 A_23_P5778RAB17, member RAS oncogene family (RAB17), mRNA (NM_022449) 10001.840.23–4.36
RASAL1 A_23_P139600RAS protein activator like 1 (GAP1 like) (RASAL1), mRNA (NM_004658) 1402.041.651.460.38–2.41
RASD1 A_23_P118392RAS, dexamethasone-induced 1 (RASD1), mRNA (NM_016084) 1052.041.553.140.88–21.55
A_24_P34800627002.690.85–12.90
RHOB A_23_P51136ras homolog gene family, member B (RHOB), mRNA (NM_004040) 16001.990.51–2.96
RHOU A_23_P114814ras homolog gene family, member U (RHOU), mRNA (NM_021205) 1221.751.552.680.71–3.65
RHOV A_23_P117912Rho-related GTP-binding protein RhoV (Wnt-1 responsive Cdc42 homolog 2)(WRCH-2)(CDC42-like GTPase 2)(GTP-binding protein-like 2) (Rho GTPase-like protein ARHV) (ENST00000220507) 1841.941.791.600.25–5.45