Research Article

Molecular Profiles of Pre- and Postoperative Breast Cancer Tumours Reveal Differentially Expressed Genes

Table 4

Gene functional classification (DAVID) of the differently expressed genes.

Gene nameAgilent IDDescription

Gene group 1Enrichment score: 2.11
Kinase/phosphatase

DCAKD A_24_P58331Dephospho-CoA kinase domain containing
SIK2 A_23_P138957Salt-inducible kinase 2
ITPKC A_23_P208369Inositol 1,4,5-trisphosphate 3-kinase C
DAK A_23_P36129Dihydroxyacetone kinase 2 homolog (S. cerevisiae)
RIPK4 A_23_P211267Receptor-interacting serine-threonine kinase 4
CHKA A_23_P136135Choline kinase alpha
DDR1 A_23_P93311,
A_24_P367289
Discoidin domain receptor tyrosine kinase 1
STK35 A_24_P940537Serine/threonine kinase 35
ACTR3B A_23_P123193ARP3 actin-related protein 3 homolog B (yeast)
INO80 A_24_P39454INO80 homolog (S. cerevisiae)
EPHA1 A_23_P157333EPH receptor A1
BCR A_24_P15270Breakpoint cluster region
CAMK1D A_23_P124252Calcium/calmodulin-dependent protein kinase ID
HISPPD2A A_23_P205818Histidine acid phosphatase domain containing 2A

Gene group 2Enrichment score: 1.35
Ras

RHOB A_23_P51136Ras homolog gene family, member B
RHOV A_23_P117912Ras homolog gene family, member V
RASD1 A_24_P348006,
A_23_P118392
RAS, dexamethasone-induced 1
RAB17 A_23_P5778RAB17, member RAS oncogene family
RHOU A_23_P114814Ras homolog gene family, member U

Gene group 3Enrichment score: 1.26
Negative regulation of transcription

ARID5B A_23_P97871AT rich interactive domain 5B (MRF1-like)
COBRA1 A_23_P148150Cofactor of BRCA1
TH1L A_24_P222126TH1-like (Drosophila)
FOXD3 A_23_P46560Forkhead box D3
EID2 A_23_P365844EP300 interacting inhibitor of differentiation 2

Gene group 4Enrichment score: 0.42
Transmembrane

PQLC1 A_24_P181677PQ loop repeat containing 1
RNF215 A_32_P420563Ring finger protein 215
KIAA1305 A_23_P129005KIAA1305
TMEM49 A_32_P9753Transmembrane protein 49
F11R A_24_P319369F11 receptor
RBM8A A_23_P305335Gonadotropin-releasing hormone (type 2) receptor 2
KIAA0922 A_23_P257250KIAA0922
TSPAN12 A_23_P145984Tetraspanin 12
DGCR2 A_24_P125881DiGeorge syndrome critical region gene 2
PCDH1 A_23_P213359Protocadherin 1
LMBRD2 A_32_P8952LMBR1 domain containing 2
GPR65 A_23_P14564G protein-coupled receptor 65
EVI2B A_23_P66694Ecotropic viral integration site 2B
RTF1 A_24_P93741RFT1 homolog (S. cerevisiae)
TMEM19 A_24_P358976Transmembrane protein 19
GPR155 A_23_P335958G protein-coupled receptor 155
OSMR A_24_P145134Oncostatin M receptor
TMEM97 A_32_P201521Transmembrane protein 97
PTPRE A_24_P213503,
A_24_P213494
Protein tyrosine phosphatase, receptor type, E