Molecular Characterisation of Bacterial Community Structure along the Intestinal Tract of Zebrafish (Danio rerio): A Pilot Study
Table 1
Comparison of bacterial phyla identified in the study by Roeselers et al. [19] and this study.
Phylum
Sanger sequencing clone libraries
Pyrosequencing libraries
This studya
Proteobacteria
Firmicutes
Bacteroidetes
Not found
Verrucomicrobia
Not found
Actinobacteria
TM7
Not found
Fusobacteria
Planctomycetes
Nitrospira
Not found
Deinococcus-Thermus
Not found
Not found
Tenericutes
Not found
Not found
Acidobacteria
Not found
Cyanobacteria
Not found
Unclassified bacteria
aIn this study, % of each phylum in the clone libraries (IB, MI, and PI) was derived by pooling clones from different compartments from each fish. of clone libraries (). The seven libraries include D.rerio.UNC.1, D.rerio.India.1, D.rerio.ZIRC.1, D.rerio.UO.1, D.rerio.WU.1, D.rerio.WU.2, and D.rerio.UW.1. of libraries (). The three libraries include D.rerio.India.1, D.rerio.UNC.1, and D.rerio.UW.1. of pooled clone libraries ().