Partitioning a PPI Network into Overlapping Modules Constrained by High-Density and Periphery Tracking

Table 1

Number of proteins and interactions in five different PPI data sets (netwrks) and the number of modules generated by DPClusO, COACH, and CORE algorithms in each of the PPI networks.

Dataset	Proteins	Interaction	DPClusO (All)	DPClusO (Size >3)	COACH (All)	CORE (All)
Gavin	1430	7592	1135	759	326	662
Krogan	2674	7079	2206	656	345	785
MIPS	4546	12319	4136	969	489	1678
DIP	4959	21752	4818	1582	896	1635
Union	5497	35898	5614	2434	1283	1613