Table of Contents
ISRN Bioinformatics
Volume 2012 (2012), Article ID 790452, 7 pages
http://dx.doi.org/10.5402/2012/790452
Research Article

Signal Peptidase Complex Subunit 1 and Hydroxyacyl-CoA Dehydrogenase Beta Subunit Are Suitable Reference Genes in Human Lungs

1Department of Biological Sciences, National University of Singapore, Singapore 117543
2Department of Zoology, The University of Melbourne, Parkville, Victoria 3010, Australia

Received 10 September 2011; Accepted 27 October 2011

Academic Editors: T. R. Hvidsten, C. Ortutay, and A. Torkamani

Copyright © 2012 Issac H. K. Too and Maurice H. T. Ling. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Abstract

Lung cancer is a common cancer, and expression profiling can provide an accurate indication to advance the medical intervention. However, this requires the availability of stably expressed genes as reference. Recent studies had shown that genes that are stably expressed in a tissue may not be stably expressed in other tissues suggesting the need to identify stably expressed genes in each tissue for use as reference genes. DNA microarray analysis has been used to identify those reference genes with low fluctuation. Fourteen datasets with different lung conditions were employed in our study. Coefficient of variance, followed by NormFinder, was used to identify stably expressed genes. Our results showed that classical reference genes such as GAPDH and HPRT1 were highly variable; thus, they are unsuitable as reference genes. Signal peptidase complex subunit 1 (SPCS1) and hydroxyacyl-CoA dehydrogenase beta subunit (HADHB), which are involved in fundamental biochemical processes, demonstrated high expression stability suggesting their suitability in human lung cell profiling.